FastQCFastQC Report
Mon 8 Aug 2022
18C_S102_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename18C_S102_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6101697
Sequences flagged as poor quality0
Sequence length20-86
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGCTT136590.22385575684928308No Hit
AAGACAGTTTTAGGGAATCTATGTAATTCTACCTAGTTTGTTTTTATACT78860.12924273361984379No Hit
AAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGAAAA77440.12691551219275557No Hit
AGATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAG75950.12447356858264186No Hit
CGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGA69400.11373885002811514No Hit
TCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACG68730.11264079484772842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)