FastQCFastQC Report
Mon 8 Aug 2022
14C_S98_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename14C_S98_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6439131
Sequences flagged as poor quality0
Sequence length20-86
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGAAAA212780.33044831670608965No Hit
AAGAAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGA136670.21224913734477524No Hit
TATAAGAAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTA72640.11281025343326608No Hit
GTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAA64870.10074340776729035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)