FastQCFastQC Report
Mon 8 Aug 2022
06C_S90_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename06C_S90_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6793818
Sequences flagged as poor quality0
Sequence length20-86
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGAAAA396970.5843106188596751No Hit
TGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGCTT278290.40962239494787767No Hit
AAGAAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGA259000.38122893489345755No Hit
TAAATTCATGCACTCAATTTAGTAAATCAGTTACTGCAATCAAGGAGGTA164800.24257346899784482No Hit
AGATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAG154090.226809137365764No Hit
TATAAGAAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTA138800.20430338286954405No Hit
TAGAAAATACAAATCATTACATGTACAATTATGTCTATGAAAACTGATGA119130.17535059078709497No Hit
AACAGATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTG112660.1658272270467063No Hit
ATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGCTTTATTGGAAATT112440.1655034032410053No Hit
GATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGC103650.15256517027686053No Hit
TACAAATCATTACATGTACAATTATGTCTATGAAAACTGATGATTTTATG103300.152049996040518No Hit
TCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGCTTTATTGG102610.1510343668317285No Hit
AAGACAGTTTTAGGGAATCTATGTAATTCTACCTAGTTTGTTTTTATACT93900.13821388797874776No Hit
GATGGCCAGTGCCCCGAGGAACAGATGTGTTTCTGGATATGTTGATTCTA85440.1257613907231545No Hit
AAACTGATGATTTTATGCAATAATAAATATGAAAAATGATCATAGCTTTT70060.10312316285187503No Hit
AAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGAAAACTGA69260.10194562174023503No Hit
ACAGATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGA68510.1008416769480725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)