FastQCFastQC Report
Fri 21 Oct 2022
04A_S39_L002_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename04A_S39_L002_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5383358
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTGGGGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGG76140.14143588444238708No Hit
TGCTGGGGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGG68800.12780127199417168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)