[quant] fragment length distribution is truncated gaussian with mean = 40, sd = 1 [index] k-mer length: 31 [index] number of targets: 411,251 [index] number of k-mers: 226,292,820 [index] number of equivalence classes: 4,978,133 [quant] running in single-end mode [quant] will process file 1: ../data/T001F_S100_L001_R1_001.fastq.gz [quant] will process file 2: ../data/T001F_S100_L002_R1_001.fastq.gz [quant] will process file 3: ../data/T001FX_S219_L001_R1_001.fastq.gz [quant] will process file 4: ../data/T001FX_S219_L002_R1_001.fastq.gz [quant] will process file 5: ../data/T001G_S112_L001_R1_001.fastq.gz [quant] will process file 6: ../data/T001G_S112_L002_R1_001.fastq.gz [quant] will process file 7: ../data/T002F_S101_L001_R1_001.fastq.gz [quant] will process file 8: ../data/T002F_S101_L002_R1_001.fastq.gz [quant] will process file 9: ../data/T002FX_S220_L001_R1_001.fastq.gz [quant] will process file 10: ../data/T002FX_S220_L002_R1_001.fastq.gz [quant] will process file 11: 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../data/T135G_S145_L002_R1_001.fastq.gz [quant] will process file 138: ../data/T136F_S134_L001_R1_001.fastq.gz [quant] will process file 139: ../data/T136F_S134_L002_R1_001.fastq.gz [quant] will process file 140: ../data/T136G_S146_L001_R1_001.fastq.gz [quant] will process file 141: ../data/T136G_S146_L002_R1_001.fastq.gz [quant] will process file 142: ../data/T137F_S135_L001_R1_001.fastq.gz [quant] will process file 143: ../data/T137F_S135_L002_R1_001.fastq.gz [quant] will process file 144: ../data/T137G_S147_L001_R1_001.fastq.gz [quant] will process file 145: ../data/T137G_S147_L002_R1_001.fastq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 431,120,653 reads, 259,656,096 reads pseudoaligned [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,402 rounds