FastQCFastQC Report
Tue 9 Aug 2022
T009F_S108_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameT009F_S108_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4430602
Sequences flagged as poor quality0
Sequence length20-86
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTACGGTGTTAGA169180.38184427308072355No Hit
AGGGGAAGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAGGCGTAG149700.3378773358563915No Hit
TGGAGGGGAAGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAGGCG120750.27253632802043604No Hit
TATTGGAGGGGAAGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAG116940.26393704512389066No Hit
AGCTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTACGGT111030.2505980000009028No Hit
TCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTACGGTGTT103780.23423453517151843No Hit
AGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCGACCTCG102390.2310972639835399No Hit
CGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTA99580.2247550107186337No Hit
AACAGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCGACC91570.20667620336920356No Hit
GATAACAGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCG79610.17968212897479846No Hit
TGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCC77430.17476180437782496No Hit
GCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCGACCTCGA71380.16110677510640767No Hit
GACTGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATC61500.13880732234581214No Hit
ACAGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCGACCT59600.13451896604569763No Hit
AGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAGGCGTAGAAGCTT55840.12603253463073416No Hit
TTGCGACCTCGATGTTGGCTTTAGATATCCTAGAGGCGTAGAAGCTTCCA54050.12199245159009994No Hit
CGCGTTTATTAGATCAAAACCAGTCGGGTCCGCAAGGGCCCGTCGGATTG53040.11971285166214433No Hit
AAGCGTGATTGGGACGGGCACGGGCTGGGCGAGGCTGGCTCTTCTTTCGG49300.11127156083981364No Hit
GGAAGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAGGCGTAGAAG49220.11109099846928251No Hit
ATAACAGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCGA48380.10919509357870556No Hit
TACCCGCTGAATTTAAGCATATCACTAAGCGGAGGAAAAGAAACTAACTA48040.10842770350394822No Hit
GTAATTGGAATGAGTACACTTTAAACCCTTTAACGAGGATCTATTGGAGG46670.10533557290860249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)