FastQCFastQC Report
Tue 9 Aug 2022
T005G_S116_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameT005G_S116_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5465760
Sequences flagged as poor quality0
Sequence length20-86
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATCTGGAGGGGGATAAATAAGGAAAGTAGGTTAAATAGATTTAATGAA164060.3001595386551916No Hit
AGGGGAAGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAGGCGTAG88890.1626306314217968No Hit
AGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCGACCTCG84400.15441585433681682No Hit
AAGGGCTGATGGCTACATCCTAGAAGGAAAAGAACTTGAATTCTACATGA79260.14501185562483535No Hit
AGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTACGGTGTTAGA75550.13822414449225726No Hit
TGGAGGGGAAGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAGGCG72790.13317452650683528No Hit
AACAGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCGACC72110.13193041772781827No Hit
TATTGGAGGGGAAGATTGCGACCTCGATGTTGGCTTTAGATATCCTAGAG70140.12832616141213665No Hit
GATAACAGCGCAATTTCTCCCGAAAGATGGTATTGGAGGGGAAGATTGCG62090.11359810895465589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)