Module	Section	Sample Name	Source
FastQC	all_sections	X48_S154_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X48_S154_R1_fastqc.zip
FastQC	all_sections	X48_S154_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X48_S154_L001_R1_001_fastqc.zip
FastQC	all_sections	N43_S165_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N43_S165_L002_R1_001_fastqc.zip
FastQC	all_sections	N45_S166_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N45_S166_L001_R1_001_fastqc.zip
FastQC	all_sections	X43_S173_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X43_S173_L001_R1_001_fastqc.zip
FastQC	all_sections	N56_S192_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N56_S192_R1_fastqc.zip
FastQC	all_sections	R60_S201_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R60_S201_R1_fastqc.zip
FastQC	all_sections	R54_S206_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R54_S206_R1_fastqc.zip
FastQC	all_sections	N45_S166_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N45_S166_R1_fastqc.zip
FastQC	all_sections	N53_S188_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N53_S188_L001_R1_001_fastqc.zip
FastQC	all_sections	N51_S186_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N51_S186_R1_fastqc.zip
FastQC	all_sections	R47_S179_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R47_S179_R1_fastqc.zip
FastQC	all_sections	M45_S140_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M45_S140_L002_R1_001_fastqc.zip
FastQC	all_sections	M90_S147_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M90_S147_L002_R1_001_fastqc.zip
FastQC	all_sections	D58_S144_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D58_S144_L002_R1_001_fastqc.zip
FastQC	all_sections	N58_S195_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N58_S195_L002_R1_001_fastqc.zip
FastQC	all_sections	X45_S159_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X45_S159_L001_R1_001_fastqc.zip
FastQC	all_sections	N59_S189_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N59_S189_L002_R1_001_fastqc.zip
FastQC	all_sections	N44_S171_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N44_S171_L001_R1_001_fastqc.zip
FastQC	all_sections	R57_S200_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R57_S200_R1_fastqc.zip
FastQC	all_sections	X42_S182_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X42_S182_L001_R1_001_fastqc.zip
FastQC	all_sections	*	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/*.fastq_R1.fastq_R1_fastqc.zip
FastQC	all_sections	T59_S151_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T59_S151_R1_fastqc.zip
FastQC	all_sections	N46_S170_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N46_S170_L002_R1_001_fastqc.zip
FastQC	all_sections	R61_S207_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R61_S207_L002_R1_001_fastqc.zip
FastQC	all_sections	N47_S168_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N47_S168_L001_R1_001_fastqc.zip
FastQC	all_sections	M44_S163_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M44_S163_R1_fastqc.zip
FastQC	all_sections	M46_S141_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M46_S141_L002_R1_001_fastqc.zip
FastQC	all_sections	N41_S164_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N41_S164_R1_fastqc.zip
FastQC	all_sections	R50_S174_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R50_S174_L001_R1_001_fastqc.zip
FastQC	all_sections	X46_S153_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X46_S153_R1_fastqc.zip
FastQC	all_sections	M90_S147_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M90_S147_R1_fastqc.zip
FastQC	all_sections	R61_S207_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R61_S207_L001_R1_001_fastqc.zip
FastQC	all_sections	N52_S184_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N52_S184_L001_R1_001_fastqc.zip
FastQC	all_sections	M89_S138_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M89_S138_L002_R1_001_fastqc.zip
FastQC	all_sections	N51_S186_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N51_S186_L001_R1_001_fastqc.zip
FastQC	all_sections	T57_S157_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T57_S157_L001_R1_001_fastqc.zip
FastQC	all_sections	N53_S188_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N53_S188_L002_R1_001_fastqc.zip
FastQC	all_sections	X44_S172_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X44_S172_R1_fastqc.zip
FastQC	all_sections	R58_S198_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R58_S198_L002_R1_001_fastqc.zip
FastQC	all_sections	N49_S185_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N49_S185_R1_fastqc.zip
FastQC	all_sections	T60_S149_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T60_S149_L001_R1_001_fastqc.zip
FastQC	all_sections	X47_S150_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X47_S150_R1_fastqc.zip
FastQC	all_sections	R48_S176_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R48_S176_L002_R1_001_fastqc.zip
FastQC	all_sections	D58_S144_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D58_S144_R1_fastqc.zip
FastQC	all_sections	M49_S139_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M49_S139_L001_R1_001_fastqc.zip
FastQC	all_sections	N49_S185_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N49_S185_L002_R1_001_fastqc.zip
FastQC	all_sections	R56_S197_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R56_S197_L001_R1_001_fastqc.zip
FastQC	all_sections	D57_S143_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D57_S143_L002_R1_001_fastqc.zip
FastQC	all_sections	R62_S203_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R62_S203_L001_R1_001_fastqc.zip
FastQC	all_sections	T61_S156_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T61_S156_L002_R1_001_fastqc.zip
FastQC	all_sections	T59_S151_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T59_S151_L002_R1_001_fastqc.zip
FastQC	all_sections	R53_S199_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R53_S199_R1_fastqc.zip
FastQC	all_sections	N43_S165_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N43_S165_L001_R1_001_fastqc.zip
FastQC	all_sections	R60_S201_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R60_S201_L001_R1_001_fastqc.zip
FastQC	all_sections	N57_S191_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N57_S191_L002_R1_001_fastqc.zip
FastQC	all_sections	R55_S196_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R55_S196_L002_R1_001_fastqc.zip
FastQC	all_sections	R52_S204_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R52_S204_L001_R1_001_fastqc.zip
FastQC	all_sections	D55_S146_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D55_S146_R1_fastqc.zip
FastQC	all_sections	X43_S173_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X43_S173_R1_fastqc.zip
FastQC	all_sections	R42_S175_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R42_S175_L001_R1_001_fastqc.zip
FastQC	all_sections	R55_S196_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R55_S196_L001_R1_001_fastqc.zip
FastQC	all_sections	R59_S202_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R59_S202_L002_R1_001_fastqc.zip
FastQC	all_sections	M44_S163_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M44_S163_L001_R1_001_fastqc.zip
FastQC	all_sections	X41_S183_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X41_S183_L001_R1_001_fastqc.zip
FastQC	all_sections	X44_S172_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X44_S172_L001_R1_001_fastqc.zip
FastQC	all_sections	X42_S182_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X42_S182_L002_R1_001_fastqc.zip
FastQC	all_sections	M49_S139_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M49_S139_R1_fastqc.zip
FastQC	all_sections	N55_S190_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N55_S190_R1_fastqc.zip
FastQC	all_sections	D56_S136_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D56_S136_R1_fastqc.zip
FastQC	all_sections	X45_S159_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X45_S159_R1_fastqc.zip
FastQC	all_sections	M49_S139_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M49_S139_L002_R1_001_fastqc.zip
FastQC	all_sections	R53_S199_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R53_S199_L002_R1_001_fastqc.zip
FastQC	all_sections	M89_S138_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M89_S138_R1_fastqc.zip
FastQC	all_sections	N45_S166_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N45_S166_L002_R1_001_fastqc.zip
FastQC	all_sections	M43_S160_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M43_S160_R1_fastqc.zip
FastQC	all_sections	D57_S143_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D57_S143_L001_R1_001_fastqc.zip
FastQC	all_sections	N48_S194_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N48_S194_L001_R1_001_fastqc.zip
FastQC	all_sections	N44_S171_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N44_S171_L002_R1_001_fastqc.zip
FastQC	all_sections	T55_S158_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T55_S158_L002_R1_001_fastqc.zip
FastQC	all_sections	N55_S190_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N55_S190_L002_R1_001_fastqc.zip
FastQC	all_sections	R54_S206_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R54_S206_L001_R1_001_fastqc.zip
FastQC	all_sections	R42_S175_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R42_S175_L002_R1_001_fastqc.zip
FastQC	all_sections	M89_S138_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M89_S138_L001_R1_001_fastqc.zip
FastQC	all_sections	R57_S200_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R57_S200_L002_R1_001_fastqc.zip
FastQC	all_sections	X47_S150_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X47_S150_L002_R1_001_fastqc.zip
FastQC	all_sections	N55_S190_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N55_S190_L001_R1_001_fastqc.zip
FastQC	all_sections	R43_S177_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R43_S177_L002_R1_001_fastqc.zip
FastQC	all_sections	R53_S199_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R53_S199_L001_R1_001_fastqc.zip
FastQC	all_sections	R78_S180_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R78_S180_L002_R1_001_fastqc.zip
FastQC	all_sections	R51_S205_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R51_S205_R1_fastqc.zip
FastQC	all_sections	T62_S148_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T62_S148_R1_fastqc.zip
FastQC	all_sections	R78_S180_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R78_S180_R1_fastqc.zip
FastQC	all_sections	N57_S191_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N57_S191_L001_R1_001_fastqc.zip
FastQC	all_sections	M46_S141_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M46_S141_R1_fastqc.zip
FastQC	all_sections	R50_S174_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R50_S174_L002_R1_001_fastqc.zip
FastQC	all_sections	M48_S137_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M48_S137_L001_R1_001_fastqc.zip
FastQC	all_sections	N52_S184_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N52_S184_L002_R1_001_fastqc.zip
FastQC	all_sections	M41_S161_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M41_S161_L002_R1_001_fastqc.zip
FastQC	all_sections	N44_S171_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N44_S171_R1_fastqc.zip
FastQC	all_sections	R47_S179_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R47_S179_L002_R1_001_fastqc.zip
FastQC	all_sections	M42_S169_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M42_S169_R1_fastqc.zip
FastQC	all_sections	N56_S192_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N56_S192_L001_R1_001_fastqc.zip
FastQC	all_sections	T56_S155_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T56_S155_R1_fastqc.zip
FastQC	all_sections	X42_S182_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X42_S182_R1_fastqc.zip
FastQC	all_sections	X41_S183_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X41_S183_R1_fastqc.zip
FastQC	all_sections	D59_S142_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D59_S142_L002_R1_001_fastqc.zip
FastQC	all_sections	D58_S144_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D58_S144_L001_R1_001_fastqc.zip
FastQC	all_sections	T60_S149_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T60_S149_L002_R1_001_fastqc.zip
FastQC	all_sections	X46_S153_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X46_S153_L001_R1_001_fastqc.zip
FastQC	all_sections	R51_S205_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R51_S205_L001_R1_001_fastqc.zip
FastQC	all_sections	R58_S198_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R58_S198_R1_fastqc.zip
FastQC	all_sections	M42_S169_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M42_S169_L002_R1_001_fastqc.zip
FastQC	all_sections	T58_S152_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T58_S152_R1_fastqc.zip
FastQC	all_sections	R41_S181_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R41_S181_R1_fastqc.zip
FastQC	all_sections	R41_S181_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R41_S181_L001_R1_001_fastqc.zip
FastQC	all_sections	T61_S156_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T61_S156_L001_R1_001_fastqc.zip
FastQC	all_sections	M47_S162_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M47_S162_L001_R1_001_fastqc.zip
FastQC	all_sections	R55_S196_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R55_S196_R1_fastqc.zip
FastQC	all_sections	N49_S185_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N49_S185_L001_R1_001_fastqc.zip
FastQC	all_sections	N41_S164_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N41_S164_L002_R1_001_fastqc.zip
FastQC	all_sections	N58_S195_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N58_S195_L001_R1_001_fastqc.zip
FastQC	all_sections	R48_S176_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R48_S176_R1_fastqc.zip
FastQC	all_sections	R48_S176_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R48_S176_L001_R1_001_fastqc.zip
FastQC	all_sections	N48_S194_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N48_S194_R1_fastqc.zip
FastQC	all_sections	R62_S203_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R62_S203_L002_R1_001_fastqc.zip
FastQC	all_sections	M44_S163_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M44_S163_L002_R1_001_fastqc.zip
FastQC	all_sections	M47_S162_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M47_S162_R1_fastqc.zip
FastQC	all_sections	N42_S167_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N42_S167_L002_R1_001_fastqc.zip
FastQC	all_sections	T57_S157_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T57_S157_R1_fastqc.zip
FastQC	all_sections	M43_S160_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M43_S160_L002_R1_001_fastqc.zip
FastQC	all_sections	M46_S141_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M46_S141_L001_R1_001_fastqc.zip
FastQC	all_sections	X43_S173_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X43_S173_L002_R1_001_fastqc.zip
FastQC	all_sections	D56_S136_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D56_S136_L002_R1_001_fastqc.zip
FastQC	all_sections	R46_S178_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R46_S178_R1_fastqc.zip
FastQC	all_sections	N42_S167_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N42_S167_R1_fastqc.zip
FastQC	all_sections	R52_S204_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R52_S204_L002_R1_001_fastqc.zip
FastQC	all_sections	D55_S146_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D55_S146_L001_R1_001_fastqc.zip
FastQC	all_sections	T57_S157_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T57_S157_L002_R1_001_fastqc.zip
FastQC	all_sections	N46_S170_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N46_S170_R1_fastqc.zip
FastQC	all_sections	T59_S151_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T59_S151_L001_R1_001_fastqc.zip
FastQC	all_sections	R43_S177_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R43_S177_L001_R1_001_fastqc.zip
FastQC	all_sections	M41_S161_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M41_S161_R1_fastqc.zip
FastQC	all_sections	N58_S195_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N58_S195_R1_fastqc.zip
FastQC	all_sections	R58_S198_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R58_S198_L001_R1_001_fastqc.zip
FastQC	all_sections	N59_S189_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N59_S189_L001_R1_001_fastqc.zip
FastQC	all_sections	N50_S187_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N50_S187_L001_R1_001_fastqc.zip
FastQC	all_sections	N56_S192_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N56_S192_L002_R1_001_fastqc.zip
FastQC	all_sections	N42_S167_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N42_S167_L001_R1_001_fastqc.zip
FastQC	all_sections	N46_S170_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N46_S170_L001_R1_001_fastqc.zip
FastQC	all_sections	D54_S145_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D54_S145_R1_fastqc.zip
FastQC	all_sections	X48_S154_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X48_S154_L002_R1_001_fastqc.zip
FastQC	all_sections	M48_S137_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M48_S137_R1_fastqc.zip
FastQC	all_sections	N41_S164_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N41_S164_L001_R1_001_fastqc.zip
FastQC	all_sections	R59_S202_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R59_S202_L001_R1_001_fastqc.zip
FastQC	all_sections	M45_S140_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M45_S140_L001_R1_001_fastqc.zip
FastQC	all_sections	N54_S193_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N54_S193_R1_fastqc.zip
FastQC	all_sections	N43_S165_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N43_S165_R1_fastqc.zip
FastQC	all_sections	R52_S204_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R52_S204_R1_fastqc.zip
FastQC	all_sections	R61_S207_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R61_S207_R1_fastqc.zip
FastQC	all_sections	N50_S187_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N50_S187_L002_R1_001_fastqc.zip
FastQC	all_sections	R46_S178_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R46_S178_L002_R1_001_fastqc.zip
FastQC	all_sections	R78_S180_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R78_S180_L001_R1_001_fastqc.zip
FastQC	all_sections	N52_S184_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N52_S184_R1_fastqc.zip
FastQC	all_sections	T60_S149_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T60_S149_R1_fastqc.zip
FastQC	all_sections	N47_S168_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N47_S168_R1_fastqc.zip
FastQC	all_sections	R51_S205_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R51_S205_L002_R1_001_fastqc.zip
FastQC	all_sections	R57_S200_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R57_S200_L001_R1_001_fastqc.zip
FastQC	all_sections	T61_S156_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T61_S156_R1_fastqc.zip
FastQC	all_sections	D59_S142_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D59_S142_L001_R1_001_fastqc.zip
FastQC	all_sections	R56_S197_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R56_S197_L002_R1_001_fastqc.zip
FastQC	all_sections	T55_S158_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T55_S158_R1_fastqc.zip
FastQC	all_sections	T58_S152_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T58_S152_L002_R1_001_fastqc.zip
FastQC	all_sections	N53_S188_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N53_S188_R1_fastqc.zip
FastQC	all_sections	N54_S193_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N54_S193_L002_R1_001_fastqc.zip
FastQC	all_sections	M43_S160_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M43_S160_L001_R1_001_fastqc.zip
FastQC	all_sections	D55_S146_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D55_S146_L002_R1_001_fastqc.zip
FastQC	all_sections	N57_S191_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N57_S191_R1_fastqc.zip
FastQC	all_sections	X46_S153_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X46_S153_L002_R1_001_fastqc.zip
FastQC	all_sections	R56_S197_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R56_S197_R1_fastqc.zip
FastQC	all_sections	R42_S175_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R42_S175_R1_fastqc.zip
FastQC	all_sections	R47_S179_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R47_S179_L001_R1_001_fastqc.zip
FastQC	all_sections	N47_S168_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N47_S168_L002_R1_001_fastqc.zip
FastQC	all_sections	R54_S206_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R54_S206_L002_R1_001_fastqc.zip
FastQC	all_sections	R41_S181_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R41_S181_L002_R1_001_fastqc.zip
FastQC	all_sections	D59_S142_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D59_S142_R1_fastqc.zip
FastQC	all_sections	M41_S161_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M41_S161_L001_R1_001_fastqc.zip
FastQC	all_sections	R50_S174_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R50_S174_R1_fastqc.zip
FastQC	all_sections	M47_S162_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M47_S162_L002_R1_001_fastqc.zip
FastQC	all_sections	T56_S155_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T56_S155_L001_R1_001_fastqc.zip
FastQC	all_sections	T58_S152_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T58_S152_L001_R1_001_fastqc.zip
FastQC	all_sections	X44_S172_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X44_S172_L002_R1_001_fastqc.zip
FastQC	all_sections	X41_S183_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X41_S183_L002_R1_001_fastqc.zip
FastQC	all_sections	R59_S202_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R59_S202_R1_fastqc.zip
FastQC	all_sections	N50_S187_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N50_S187_R1_fastqc.zip
FastQC	all_sections	N59_S189_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N59_S189_R1_fastqc.zip
FastQC	all_sections	N51_S186_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N51_S186_L002_R1_001_fastqc.zip
FastQC	all_sections	M48_S137_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M48_S137_L002_R1_001_fastqc.zip
FastQC	all_sections	X47_S150_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X47_S150_L001_R1_001_fastqc.zip
FastQC	all_sections	N48_S194_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N48_S194_L002_R1_001_fastqc.zip
FastQC	all_sections	M45_S140_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M45_S140_R1_fastqc.zip
FastQC	all_sections	D56_S136_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D56_S136_L001_R1_001_fastqc.zip
FastQC	all_sections	D54_S145_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D54_S145_L002_R1_001_fastqc.zip
FastQC	all_sections	X45_S159_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/X45_S159_L002_R1_001_fastqc.zip
FastQC	all_sections	R62_S203_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R62_S203_R1_fastqc.zip
FastQC	all_sections	M42_S169_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M42_S169_L001_R1_001_fastqc.zip
FastQC	all_sections	R46_S178_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R46_S178_L001_R1_001_fastqc.zip
FastQC	all_sections	R43_S177_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R43_S177_R1_fastqc.zip
FastQC	all_sections	T62_S148_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T62_S148_L002_R1_001_fastqc.zip
FastQC	all_sections	M90_S147_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/M90_S147_L001_R1_001_fastqc.zip
FastQC	all_sections	T62_S148_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T62_S148_L001_R1_001_fastqc.zip
FastQC	all_sections	N54_S193_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/N54_S193_L001_R1_001_fastqc.zip
FastQC	all_sections	R60_S201_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/R60_S201_L002_R1_001_fastqc.zip
FastQC	all_sections	T55_S158_L001_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T55_S158_L001_R1_001_fastqc.zip
FastQC	all_sections	T56_S155_L002_R1_001	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/T56_S155_L002_R1_001_fastqc.zip
FastQC	all_sections	D57_S143_R1	/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/D57_S143_R1_fastqc.zip