[2022-09-06 09:31:27,962] multiqc [DEBUG ] This is MultiQC v1.12 [2022-09-06 09:31:27,962] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2022-09-06 09:31:27,962] multiqc [DEBUG ] No MultiQC config found: /home/shared/8TB_HDD_02/mattgeorgephd/.multiqc_config.yaml [2022-09-06 09:31:27,962] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-09-06 09:31:27,962] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc . [2022-09-06 09:31:29,047] multiqc [DEBUG ] Latest MultiQC version is v1.12 [2022-09-06 09:31:29,047] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc . [2022-09-06 09:31:29,047] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed [2022-09-06 09:31:29,048] multiqc [DEBUG ] Template : default [2022-09-06 09:31:29,048] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2022-09-06 09:31:29,049] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2022-09-06 09:31:29,049] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpqtzet4ge [2022-09-06 09:31:29,510] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed [2022-09-06 09:31:29,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N42_S167_L002_R1_001_fastqc.html [2022-09-06 09:31:29,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2022-09-06 09:31:29,802] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M43_S160_L002_R1_001_fastqc.html [2022-09-06 09:31:29,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M43_S160_L002_R1_001_fastqc.html [2022-09-06 09:31:29,802] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M43_S160_L002_R1_001_fastqc.html [2022-09-06 09:31:29,802] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M43_S160_L002_R1_001_fastqc.html [2022-09-06 09:31:29,802] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M43_S160_L002_R1_001_fastqc.html [2022-09-06 09:31:29,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M43_S160_L002_R1_001_fastqc.html [2022-09-06 09:31:29,850] multiqc 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] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R48_S176_L002_R1_001_fastqc.html [2022-09-06 09:31:30,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R48_S176_L002_R1_001_fastqc.html [2022-09-06 09:31:30,636] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: R48_S176_L002_R1_001_fastqc.html [2022-09-06 09:31:30,636] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: R48_S176_L002_R1_001_fastqc.html [2022-09-06 09:31:30,636] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: R48_S176_L002_R1_001_fastqc.html [2022-09-06 09:31:30,636] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R48_S176_L002_R1_001_fastqc.html [2022-09-06 09:31:30,636] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: D54_S145_L002_R1_001_fastqc.html [2022-09-06 09:31:30,880] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: D54_S145_L002_R1_001_fastqc.html [2022-09-06 09:31:30,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: D54_S145_L002_R1_001_fastqc.html [2022-09-06 09:31:30,880] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: D54_S145_L002_R1_001_fastqc.html [2022-09-06 09:31:30,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: D54_S145_L002_R1_001_fastqc.html [2022-09-06 09:31:30,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: D54_S145_L002_R1_001_fastqc.html [2022-09-06 09:31:30,926] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: T59_S151_R1_fastqc.html [2022-09-06 09:31:30,928] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: T59_S151_R1_fastqc.html [2022-09-06 09:31:30,928] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: T59_S151_R1_fastqc.html [2022-09-06 09:31:30,970] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: T59_S151_R1_fastqc.html [2022-09-06 09:31:30,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M42_S169_R1_fastqc.html [2022-09-06 09:31:30,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M42_S169_R1_fastqc.html [2022-09-06 09:31:30,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize 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09:31:31,026] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: D55_S146_R1_fastqc.html [2022-09-06 09:31:31,026] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: D55_S146_R1_fastqc.html [2022-09-06 09:31:31,026] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: D55_S146_R1_fastqc.html [2022-09-06 09:31:31,026] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: D55_S146_R1_fastqc.html [2022-09-06 09:31:31,026] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: D55_S146_R1_fastqc.html [2022-09-06 09:31:31,068] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: D55_S146_R1_fastqc.html [2022-09-06 09:31:31,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern 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[2022-09-06 09:31:31,125] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,125] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,125] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,125] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,125] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,125] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: T60_S149_R1_fastqc.html [2022-09-06 09:31:31,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: R50_S174_L001_R1_001_fastqc.html [2022-09-06 09:31:31,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: R50_S174_L001_R1_001_fastqc.html [2022-09-06 09:31:31,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: R50_S174_L001_R1_001_fastqc.html [2022-09-06 09:31:31,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R50_S174_L001_R1_001_fastqc.html [2022-09-06 09:31:31,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R50_S174_L001_R1_001_fastqc.html 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[DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N53_S188_L002_R1_001_fastqc.html [2022-09-06 09:31:31,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N53_S188_L002_R1_001_fastqc.html [2022-09-06 09:31:31,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N53_S188_L002_R1_001_fastqc.html [2022-09-06 09:31:31,222] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N53_S188_L002_R1_001_fastqc.html [2022-09-06 09:31:31,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N53_S188_L002_R1_001_fastqc.html [2022-09-06 09:31:31,222] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N53_S188_L002_R1_001_fastqc.html [2022-09-06 09:31:31,222] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded 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[2022-09-06 09:31:32,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: T58_S152_L002_R1_001_fastqc.html [2022-09-06 09:31:32,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: T58_S152_L002_R1_001_fastqc.html [2022-09-06 09:31:32,289] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: T58_S152_L002_R1_001_fastqc.html [2022-09-06 09:31:32,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: T58_S152_L002_R1_001_fastqc.html [2022-09-06 09:31:32,289] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: T58_S152_L002_R1_001_fastqc.html [2022-09-06 09:31:32,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: T58_S152_L002_R1_001_fastqc.html [2022-09-06 09:31:32,289] multiqc [DEBUG ] File ignored 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[2022-09-06 09:31:32,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M48_S137_L002_R1_001_fastqc.html [2022-09-06 09:31:32,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M48_S137_L002_R1_001_fastqc.html [2022-09-06 09:31:32,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M48_S137_L002_R1_001_fastqc.html [2022-09-06 09:31:32,437] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M48_S137_L002_R1_001_fastqc.html [2022-09-06 09:31:32,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M48_S137_L002_R1_001_fastqc.html [2022-09-06 09:31:32,437] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M48_S137_L002_R1_001_fastqc.html [2022-09-06 09:31:32,437] multiqc [DEBUG ] File ignored by 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09:31:32,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M45_S140_R1_fastqc.html [2022-09-06 09:31:32,533] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M45_S140_R1_fastqc.html [2022-09-06 09:31:32,533] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M45_S140_R1_fastqc.html [2022-09-06 09:31:32,533] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M45_S140_R1_fastqc.html [2022-09-06 09:31:32,533] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M45_S140_R1_fastqc.html [2022-09-06 09:31:32,533] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M45_S140_R1_fastqc.html [2022-09-06 09:31:32,576] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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[2022-09-06 09:31:32,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: T61_S156_L001_R1_001_fastqc.html [2022-09-06 09:31:32,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: T61_S156_L001_R1_001_fastqc.html [2022-09-06 09:31:32,827] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: T61_S156_L001_R1_001_fastqc.html [2022-09-06 09:31:32,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: T61_S156_L001_R1_001_fastqc.html [2022-09-06 09:31:32,827] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: T61_S156_L001_R1_001_fastqc.html [2022-09-06 09:31:32,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: T61_S156_L001_R1_001_fastqc.html [2022-09-06 09:31:32,827] multiqc [DEBUG ] File ignored 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by rseqc/junction_annotation because it exceeded search pattern filesize limit: R58_S198_L002_R1_001_fastqc.html [2022-09-06 09:31:33,025] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R58_S198_L002_R1_001_fastqc.html [2022-09-06 09:31:33,025] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: R58_S198_L002_R1_001_fastqc.html [2022-09-06 09:31:33,067] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: R58_S198_L002_R1_001_fastqc.html [2022-09-06 09:31:33,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N56_S192_L001_R1_001_fastqc.html [2022-09-06 09:31:33,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N56_S192_L001_R1_001_fastqc.html [2022-09-06 09:31:33,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded 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N56_S192_L001_R1_001_fastqc.html [2022-09-06 09:31:33,074] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: N56_S192_L001_R1_001_fastqc.html [2022-09-06 09:31:33,117] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: N56_S192_L001_R1_001_fastqc.html [2022-09-06 09:31:33,122] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,124] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,124] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,124] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,124] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,124] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,124] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,166] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: N50_S187_L002_R1_001_fastqc.html [2022-09-06 09:31:33,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,173] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,173] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: R51_S205_R1_fastqc.html [2022-09-06 09:31:33,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,220] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,221] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,221] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,221] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,221] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,263] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: R41_S181_L002_R1_001_fastqc.html [2022-09-06 09:31:33,268] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,270] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,270] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,270] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,270] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,270] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,270] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,312] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: R58_S198_L001_R1_001_fastqc.html [2022-09-06 09:31:33,317] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,318] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,319] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,319] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,319] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,319] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,319] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,319] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: N46_S170_R1_fastqc.html [2022-09-06 09:31:33,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,367] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,367] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,367] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,367] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,367] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,367] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,409] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: T60_S149_L002_R1_001_fastqc.html [2022-09-06 09:31:33,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,415] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,416] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,416] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,457] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M89_S138_R1_fastqc.html [2022-09-06 09:31:33,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,464] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,464] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: R78_S180_L002_R1_001_fastqc.html [2022-09-06 09:31:33,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,512] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,513] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,513] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,513] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,513] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,513] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,513] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,555] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: N56_S192_R1_fastqc.html [2022-09-06 09:31:33,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,562] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,562] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,562] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,562] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,604] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M47_S162_R1_fastqc.html [2022-09-06 09:31:33,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,610] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,610] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,610] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,610] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,610] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M44_S163_L001_R1_001_fastqc.html [2022-09-06 09:31:33,610] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 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[DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: X46_S153_L001_R1_001_fastqc.html [2022-09-06 09:31:33,658] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: X46_S153_L001_R1_001_fastqc.html [2022-09-06 09:31:33,659] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: X46_S153_L001_R1_001_fastqc.html [2022-09-06 09:31:33,659] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: X46_S153_L001_R1_001_fastqc.html [2022-09-06 09:31:33,659] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: X46_S153_L001_R1_001_fastqc.html [2022-09-06 09:31:33,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: X46_S153_L001_R1_001_fastqc.html [2022-09-06 09:31:33,705] multiqc [DEBUG ] File ignored by ccs/v4 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[2022-09-06 09:31:34,042] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N49_S185_L002_R1_001_fastqc.html [2022-09-06 09:31:34,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N49_S185_L002_R1_001_fastqc.html [2022-09-06 09:31:34,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N49_S185_L002_R1_001_fastqc.html [2022-09-06 09:31:34,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N49_S185_L002_R1_001_fastqc.html [2022-09-06 09:31:34,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N49_S185_L002_R1_001_fastqc.html [2022-09-06 09:31:34,044] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N49_S185_L002_R1_001_fastqc.html [2022-09-06 09:31:34,044] multiqc [DEBUG ] File ignored by 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] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N47_S168_L002_R1_001_fastqc.html [2022-09-06 09:31:37,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N47_S168_L002_R1_001_fastqc.html [2022-09-06 09:31:37,189] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N47_S168_L002_R1_001_fastqc.html [2022-09-06 09:31:37,189] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: N47_S168_L002_R1_001_fastqc.html [2022-09-06 09:31:37,189] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: N47_S168_L002_R1_001_fastqc.html [2022-09-06 09:31:37,189] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: N47_S168_L002_R1_001_fastqc.html [2022-09-06 09:31:37,189] multiqc [DEBUG ] File ignored by 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09:31:38,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N57_S191_L001_R1_001_fastqc.html [2022-09-06 09:31:38,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N57_S191_L001_R1_001_fastqc.html [2022-09-06 09:31:38,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N57_S191_L001_R1_001_fastqc.html [2022-09-06 09:31:38,249] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N57_S191_L001_R1_001_fastqc.html [2022-09-06 09:31:38,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N57_S191_L001_R1_001_fastqc.html [2022-09-06 09:31:38,249] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N57_S191_L001_R1_001_fastqc.html [2022-09-06 09:31:38,249] multiqc [DEBUG ] File ignored by rseqc/bam_stat 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09:31:38,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: R59_S202_L001_R1_001_fastqc.html [2022-09-06 09:31:38,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: R59_S202_L001_R1_001_fastqc.html [2022-09-06 09:31:38,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: R59_S202_L001_R1_001_fastqc.html [2022-09-06 09:31:38,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R59_S202_L001_R1_001_fastqc.html [2022-09-06 09:31:38,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R59_S202_L001_R1_001_fastqc.html [2022-09-06 09:31:38,705] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: R59_S202_L001_R1_001_fastqc.html [2022-09-06 09:31:38,705] multiqc [DEBUG ] File ignored by rseqc/bam_stat 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[2022-09-06 09:31:39,420] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N50_S187_L001_R1_001_fastqc.html [2022-09-06 09:31:39,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N50_S187_L001_R1_001_fastqc.html [2022-09-06 09:31:39,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N50_S187_L001_R1_001_fastqc.html [2022-09-06 09:31:39,421] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N50_S187_L001_R1_001_fastqc.html [2022-09-06 09:31:39,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N50_S187_L001_R1_001_fastqc.html [2022-09-06 09:31:39,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N50_S187_L001_R1_001_fastqc.html [2022-09-06 09:31:39,422] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N56_S192_L002_R1_001_fastqc.html [2022-09-06 09:31:39,881] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: N56_S192_L002_R1_001_fastqc.html [2022-09-06 09:31:39,881] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: N56_S192_L002_R1_001_fastqc.html [2022-09-06 09:31:39,881] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: N56_S192_L002_R1_001_fastqc.html [2022-09-06 09:31:39,881] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: N56_S192_L002_R1_001_fastqc.html [2022-09-06 09:31:39,940] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: N56_S192_L002_R1_001_fastqc.html [2022-09-06 09:31:39,946] multiqc [DEBUG ] File ignored by 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[2022-09-06 09:31:40,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: N43_S165_L001_R1_001_fastqc.html [2022-09-06 09:31:40,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: N43_S165_L001_R1_001_fastqc.html [2022-09-06 09:31:40,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: N43_S165_L001_R1_001_fastqc.html [2022-09-06 09:31:40,662] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: N43_S165_L001_R1_001_fastqc.html [2022-09-06 09:31:40,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N43_S165_L001_R1_001_fastqc.html [2022-09-06 09:31:40,663] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N43_S165_L001_R1_001_fastqc.html [2022-09-06 09:31:40,663] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N41_S164_L002_R1_001_fastqc.html [2022-09-06 09:31:41,076] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: N41_S164_L002_R1_001_fastqc.html [2022-09-06 09:31:41,076] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: N41_S164_L002_R1_001_fastqc.html [2022-09-06 09:31:41,076] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: N41_S164_L002_R1_001_fastqc.html [2022-09-06 09:31:41,076] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: N41_S164_L002_R1_001_fastqc.html [2022-09-06 09:31:41,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: N41_S164_L002_R1_001_fastqc.html [2022-09-06 09:31:41,140] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: R52_S204_R1_fastqc.html [2022-09-06 09:31:41,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R52_S204_R1_fastqc.html [2022-09-06 09:31:41,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: R52_S204_R1_fastqc.html [2022-09-06 09:31:41,199] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: R52_S204_R1_fastqc.html [2022-09-06 09:31:41,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: X43_S173_L001_R1_001_fastqc.html [2022-09-06 09:31:41,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: X43_S173_L001_R1_001_fastqc.html [2022-09-06 09:31:41,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search 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X43_S173_L001_R1_001_fastqc.html [2022-09-06 09:31:41,207] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: X43_S173_L001_R1_001_fastqc.html [2022-09-06 09:31:41,264] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: X43_S173_L001_R1_001_fastqc.html [2022-09-06 09:31:41,270] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,272] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,272] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,272] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,272] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,272] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,272] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: R52_S204_L002_R1_001_fastqc.html [2022-09-06 09:31:41,330] multiqc [DEBUG ] File ignored 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[2022-09-06 09:31:41,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: D57_S143_L001_R1_001_fastqc.html [2022-09-06 09:31:41,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: D57_S143_L001_R1_001_fastqc.html [2022-09-06 09:31:41,403] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: D57_S143_L001_R1_001_fastqc.html [2022-09-06 09:31:41,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: D57_S143_L001_R1_001_fastqc.html [2022-09-06 09:31:41,403] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: D57_S143_L001_R1_001_fastqc.html [2022-09-06 09:31:41,403] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: D57_S143_L001_R1_001_fastqc.html [2022-09-06 09:31:41,403] multiqc [DEBUG ] File ignored 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[DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: N49_S185_L001_R1_001_fastqc.html [2022-09-06 09:31:41,534] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: N49_S185_L001_R1_001_fastqc.html [2022-09-06 09:31:41,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: N49_S185_L001_R1_001_fastqc.html [2022-09-06 09:31:41,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: N49_S185_L001_R1_001_fastqc.html [2022-09-06 09:31:41,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: N49_S185_L001_R1_001_fastqc.html [2022-09-06 09:31:41,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: N49_S185_L001_R1_001_fastqc.html [2022-09-06 09:31:41,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: N49_S185_L001_R1_001_fastqc.html [2022-09-06 09:31:41,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,600] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,600] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,600] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,600] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,600] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,600] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:41,657] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: X45_S159_R1_fastqc.html [2022-09-06 09:31:42,999] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2022-09-06 09:31:43,012] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2022-09-06 09:31:49,123] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: * [2022-09-06 09:31:49,671] multiqc.modules.fastqc.fastqc [INFO ] Found 216 reports [2022-09-06 09:31:49,675] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '*' [2022-09-06 09:32:00,882] multiqc [INFO ] Compressing plot data [2022-09-06 09:32:00,929] multiqc [INFO ] Report : multiqc_report.html [2022-09-06 09:32:00,929] multiqc [INFO ] Data : multiqc_data [2022-09-06 09:32:00,929] multiqc [DEBUG ] Moving data file from '/tmp/tmpqtzet4ge/multiqc_data' to '/home/shared/8TB_HDD_02/mattgeorgephd/NOPP-gigas-ploidy-temp/fastqc/trimmed/multiqc_data' [2022-09-06 09:32:01,168] multiqc [INFO ] MultiQC complete [2022-09-06 09:32:01,168] multiqc [WARNING] 8 flat-image plots used in the report due to large sample numbers