FastQCFastQC Report
Mon 5 Sep 2022
X48_S154_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameX48_S154_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2294480
Sequences flagged as poor quality0
Sequence length20-86
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTAAAAATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC31230.1361092709459224No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGAC30680.13371221366061156No Hit
CGCTTTTATTAGATCAAAACCGATCGGTCGCAAGGCCGTCCTTTTTGGTG27670.12059377288100137No Hit
TAGTGTGTTAAAAATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC27460.11967853282660995No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGACG25830.11257452669014331No Hit
GTGTGTTAAAAATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG24840.1082598235765838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)