FastQCFastQC Report
Mon 5 Sep 2022
X46_S153_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameX46_S153_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6059888
Sequences flagged as poor quality0
Sequence length20-86
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC89290.14734595754905042No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGAC86360.142510884689618No Hit
GTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG84620.13963954449323154No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC78440.12944133620951412No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATT69920.1153816704203114No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGACG66590.10988651935481317No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAA63610.10496893671962254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)