FastQCFastQC Report
Mon 5 Sep 2022
X46_S153_L002_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameX46_S153_L002_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3056123
Sequences flagged as poor quality0
Sequence length20-86
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC44980.14717994007440147No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGAC44290.1449221775432468No Hit
GTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG42390.13870515028354552No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC40170.13144104474852616No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATT35680.11674922769796896No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGACG33350.10912518900580899No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAA32070.10493687590453656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)