FastQCFastQC Report
Mon 5 Sep 2022
X46_S153_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameX46_S153_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3003765
Sequences flagged as poor quality0
Sequence length20-86
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC44310.1475148688396063No Hit
GTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG42230.1405902259331206No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGAC42070.14005756109416015No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC38270.12740677116884977No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATT34240.11399027553753373No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGACG33240.110661120294031No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAA31540.10500155638007633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)