FastQCFastQC Report
Mon 5 Sep 2022
T56_S155_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameT56_S155_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4945707
Sequences flagged as poor quality0
Sequence length20-86
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGAC71820.14521685170593407No Hit
TGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC71670.14491355836486067No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC64310.13003196509619352No Hit
GTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG63470.1283335223861826No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATT54950.11110646061321466No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGACG54030.10924626145463125No Hit
CGCTTTTATTAGATCAAAACCGATCGGTCGCAAGGCCGTCCTTTTTGGTG53350.10787133164176527No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAA50220.10154261059136742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)