FastQCFastQC Report
Mon 5 Sep 2022
T56_S155_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameT56_S155_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2452334
Sequences flagged as poor quality0
Sequence length20-86
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC35270.14382217104195433No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGAC34640.14125318981835264No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC32090.1308549324847268No Hit
GTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG31640.12901994589643986No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATT26850.10948753310111917No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGACG26710.10891664838476324No Hit
CGCTTTTATTAGATCAAAACCGATCGGTCGCAAGGCCGTCCTTTTTGGTG26200.1068369969180381No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAA25260.10300391382250541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)