FastQCFastQC Report
Mon 5 Sep 2022
R62_S203_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameR62_S203_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2827778
Sequences flagged as poor quality0
Sequence length20-86
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG78750.27848720797742965No Hit
TGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC73760.2608408439417804No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATT67130.23739487328920447No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC65950.23322198560141566No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAA59110.20903338239423322No Hit
GGCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAA56740.2006522435636744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)