FastQCFastQC Report
Mon 5 Sep 2022
R55_S196_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameR55_S196_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4983241
Sequences flagged as poor quality0
Sequence length20-86
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAAATTCGG336800.6758653655321908No Hit
TGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAAATTCGGC316430.6349883539648193No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAAATT273150.5481372464225591No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAAATTC271950.545729175048929No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAAA243310.4882565382649565No Hit
GGCGTAGTGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAA227740.45701181219210546No Hit
CGTAGTGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAAAT60820.12204908412015393No Hit
TTATAAGTGAAAAATTCGGCTAAAGGTTGGATTTAAAATGCTTTCTAAGT50180.10069751794063342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)