FastQCFastQC Report
Mon 5 Sep 2022
N42_S167_L002_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameN42_S167_L002_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2409893
Sequences flagged as poor quality0
Sequence length20-86
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTTTATTAGATCAAAACCGATCGGTCGCAAGGCCGTCCTTTTTGGTG31430.13042072822320325No Hit
GCAAATTACCCACTCCTGGCACGGGGAGGTAGTGAC29380.12191412647781458No Hit
TGTGTTAAAGATACTCACTAGACCAGGATATTATAAGTGAAAAATTCGGC25460.10564784411590059No Hit
AGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGA24840.10307511578314889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)