FastQCFastQC Report
Mon 5 Sep 2022
D56_S136_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameD56_S136_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5733516
Sequences flagged as poor quality0
Sequence length20-86
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGGC90570.15796589736559558No Hit
GTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTCGG85600.14929756889140974No Hit
TAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATTC84570.14750111449937525No Hit
GTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAATT75890.13236206195290987No Hit
AGTGCCATATACCCCCCACATGAACTCTTGAGTACTAGATGAATGACTAT71620.12491462481311642No Hit
GCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAAA71310.12437394436502835No Hit
GGCGTAGTGTGTTAAAGATACTCACTAGACCAGGATGTTATAAGTGAAAA60160.10492688953863563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)