A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2020-03-06, 13:52 based on data in:
/gscratch/scrubbed/samwhite/outputs/20200305_methcompare_fastp_trimming
General Statistics
Showing 18/18 rows and 4/6 columns.| Sample Name | % Duplication | GC content | % PF | % Adapter |
|---|---|---|---|---|
| Meth1 | 50.4% | 21.5% | 97.1% | 36.5% |
| Meth10 | 57.0% | 23.0% | 97.1% | 38.2% |
| Meth11 | 44.1% | 22.9% | 97.4% | 37.0% |
| Meth12 | 46.7% | 22.8% | 96.7% | 32.4% |
| Meth13 | 37.7% | 23.2% | 97.7% | 55.9% |
| Meth14 | 40.9% | 23.8% | 97.7% | 65.1% |
| Meth15 | 37.6% | 23.6% | 97.5% | 61.5% |
| Meth16 | 65.7% | 25.1% | 94.9% | 37.9% |
| Meth17 | 76.6% | 27.4% | 93.2% | 39.4% |
| Meth18 | 74.1% | 25.0% | 94.6% | 38.0% |
| Meth2 | 43.5% | 21.5% | 97.2% | 41.0% |
| Meth3 | 44.9% | 21.9% | 96.8% | 36.8% |
| Meth4 | 37.5% | 24.3% | 97.4% | 68.1% |
| Meth5 | 36.9% | 24.0% | 97.5% | 65.0% |
| Meth6 | 35.5% | 24.1% | 97.4% | 65.9% |
| Meth7 | 49.7% | 24.7% | 97.0% | 47.0% |
| Meth8 | 48.4% | 27.4% | 97.3% | 46.2% |
| Meth9 | 50.6% | 24.5% | 96.6% | 47.8% |
fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Duplication Rates
Duplication rates of sampled reads.
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Insert Sizes
Insert size estimation of sampled reads.
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Sequence Quality
Average sequencing quality over each base of all reads.
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GC Content
Average GC content over each base of all reads.
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N content
Average N content over each base of all reads.
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