A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2023-04-25, 14:09 based on data in:
/scratch/lspencer/DuMOAR/aligned/trim-before-concat/scratch/lspencer/DuMOAR/aligned/trim-before-concat
General Statistics
Showing 20/20 rows and 6/8 columns.| Sample Name | % mCpG | % mCHG | % mCHH | M C's | % Dups | % Aligned |
|---|---|---|---|---|---|---|
| CH01_06_S1_R1 | 73.4% | 1.3% | 7.0% | 114.3 | 35.1% | 47.9% |
| CH01_14_S2_R1 | 67.7% | 1.7% | 12.8% | 80.1 | 40.7% | 44.6% |
| CH01_22_S3_R1 | 66.2% | 1.2% | 8.2% | 127.4 | 38.0% | 48.4% |
| CH01_38_S4_R1 | 68.1% | 1.6% | 12.2% | 84.8 | 32.1% | 44.7% |
| CH03_04_S5_R1 | 11.4% | 2.5% | 35.4% | 65.9 | 26.4% | 31.9% |
| CH03_15_S6_R1 | 19.4% | 1.5% | 18.4% | 79.3 | 38.9% | 31.2% |
| CH03_33_S7_R1 | 72.5% | 1.1% | 5.6% | 121.2 | 36.0% | 48.1% |
| CH05_01_S8_R1 | 51.8% | 2.1% | 26.6% | 89.6 | 27.9% | 39.2% |
| CH05_06_S9_R1 | 7.0% | 1.4% | 16.0% | 58.2 | 47.1% | 30.2% |
| CH05_21_S10_R1 | 64.1% | 1.3% | 12.5% | 108.0 | 36.0% | 48.6% |
| CH05_24_S11_R1 | 71.6% | 1.6% | 13.9% | 136.0 | 34.6% | 48.1% |
| CH07_06_S12_R1 | 64.1% | 1.3% | 9.0% | 120.3 | 34.7% | 47.0% |
| CH07_11_S13_R1 | 7.8% | 1.6% | 12.7% | 75.3 | 42.6% | 31.4% |
| CH07_24_S14_R1 | 7.0% | 1.6% | 13.7% | 78.6 | 48.0% | 34.9% |
| CH09_02_S15_R1 | 68.4% | 1.8% | 15.6% | 82.8 | 31.7% | 43.4% |
| CH09_13_S16_R1 | 45.8% | 1.9% | 19.7% | 53.2 | 75.7% | 49.5% |
| CH09_28_S17_R1 | 67.6% | 1.7% | 7.8% | 103.9 | 34.1% | 48.1% |
| CH10_01_S18_R1 | 70.8% | 1.4% | 7.7% | 93.3 | 29.1% | 49.9% |
| CH10_08_S19_R1 | 31.2% | 1.8% | 26.8% | 73.2 | 26.6% | 38.1% |
| CH10_11_S20_R1 | 67.7% | 1.5% | 12.3% | 95.1 | 31.7% | 46.7% |
Bismark
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.
Alignment Rates
Deduplication
Strand Alignment
Cytosine Methylation
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M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.
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