A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2022-11-22, 11:52 based on data in:
/scratch/lspencer/DuMOAR/aligned/lanes-separately/4417/scratch/lspencer/DuMOAR/aligned/lanes-separately/4417
General Statistics
Showing 20/20 rows and 6/8 columns.| Sample Name | % mCpG | % mCHG | % mCHH | M C's | % Dups | % Aligned |
|---|---|---|---|---|---|---|
| CH01_06_S1_L001_R1_001_val_1 | 74.3% | 1.2% | 6.0% | 60.0 | 32.0% | 49.7% |
| CH01_14_S2_L001_R1_001_val_1 | 68.6% | 1.6% | 10.7% | 41.2 | 37.2% | 46.1% |
| CH01_22_S3_L001_R1_001_val_1 | 67.3% | 1.1% | 7.0% | 68.2 | 33.9% | 50.6% |
| CH01_38_S4_L001_R1_001_val_1 | 68.8% | 1.6% | 10.7% | 43.2 | 31.2% | 46.5% |
| CH03_04_S5_L001_R1_001_val_1 | 11.9% | 2.3% | 34.0% | 32.2 | 25.0% | 30.6% |
| CH03_15_S6_L001_R1_001_val_1 | 20.8% | 1.5% | 17.8% | 40.1 | 34.7% | 30.5% |
| CH03_33_S7_L001_R1_001_val_1 | 73.6% | 1.1% | 5.1% | 63.9 | 33.8% | 49.8% |
| CH05_01_S8_L001_R1_001_val_1 | 52.4% | 1.9% | 24.8% | 44.9 | 27.5% | 39.8% |
| CH05_06_S9_L001_R1_001_val_1 | 7.3% | 1.3% | 14.9% | 31.3 | 38.4% | 29.4% |
| CH05_21_S10_L001_R1_001_val_1 | 65.0% | 1.3% | 11.4% | 55.8 | 35.1% | 50.5% |
| CH05_24_S11_L001_R1_001_val_1 | 72.3% | 1.5% | 12.3% | 69.1 | 32.9% | 50.1% |
| CH07_06_S12_L001_R1_001_val_1 | 65.7% | 1.3% | 8.4% | 62.3 | 32.7% | 47.9% |
| CH07_11_S13_L001_R1_001_val_1 | 8.2% | 1.6% | 12.3% | 39.1 | 36.9% | 30.5% |
| CH07_24_S14_L001_R1_001_val_1 | 7.3% | 1.5% | 12.4% | 42.9 | 38.9% | 33.3% |
| CH09_02_S15_L001_R1_001_val_1 | 69.2% | 1.8% | 14.2% | 42.0 | 30.4% | 46.1% |
| CH09_13_S16_L001_R1_001_val_1 | 47.7% | 1.7% | 14.7% | 36.8 | 65.0% | 50.8% |
| CH09_28_S17_L001_R1_001_val_1 | 68.8% | 1.7% | 7.1% | 54.3 | 32.2% | 49.8% |
| CH10_01_S18_L001_R1_001_val_1 | 71.6% | 1.4% | 7.0% | 48.5 | 27.7% | 51.9% |
| CH10_08_S19_L001_R1_001_val_1 | 32.6% | 1.8% | 26.2% | 37.7 | 25.7% | 38.2% |
| CH10_11_S20_L001_R1_001_val_1 | 68.5% | 1.5% | 11.2% | 49.3 | 30.5% | 48.0% |
Bismark
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.
Alignment Rates
Deduplication
Strand Alignment
Cytosine Methylation
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M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.
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