A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2022-11-22, 11:19 based on data in:
/scratch/lspencer/DuMOAR/aligned/lanes-separately/4416/scratch/lspencer/DuMOAR/aligned/lanes-separately/4416
General Statistics
Showing 20/20 rows and 6/8 columns.| Sample Name | % mCpG | % mCHG | % mCHH | M C's | % Dups | % Aligned |
|---|---|---|---|---|---|---|
| CH01_06_S1_L001_R1_001_val_1 | 74.6% | 1.2% | 6.5% | 65.5 | 32.6% | 50.9% |
| CH01_14_S2_L001_R1_001_val_1 | 69.0% | 1.6% | 12.5% | 46.8 | 37.9% | 47.0% |
| CH01_22_S3_L001_R1_001_val_1 | 67.6% | 1.1% | 7.8% | 73.7 | 34.6% | 51.1% |
| CH01_38_S4_L001_R1_001_val_1 | 69.2% | 1.6% | 11.8% | 46.4 | 31.4% | 47.0% |
| CH03_04_S5_L001_R1_001_val_1 | 12.6% | 2.6% | 36.8% | 32.9 | 24.8% | 31.9% |
| CH03_15_S6_L001_R1_001_val_1 | 21.2% | 1.5% | 18.1% | 42.0 | 35.3% | 30.9% |
| CH03_33_S7_L001_R1_001_val_1 | 73.9% | 1.1% | 5.3% | 67.0 | 34.2% | 51.0% |
| CH05_01_S8_L001_R1_001_val_1 | 53.4% | 2.1% | 26.5% | 47.4 | 27.6% | 40.9% |
| CH05_06_S9_L001_R1_001_val_1 | 7.6% | 1.3% | 15.4% | 33.5 | 40.1% | 29.7% |
| CH05_21_S10_L001_R1_001_val_1 | 65.3% | 1.2% | 12.0% | 57.8 | 35.3% | 50.8% |
| CH05_24_S11_L001_R1_001_val_1 | 72.8% | 1.5% | 13.3% | 75.9 | 33.3% | 50.6% |
| CH07_06_S12_L001_R1_001_val_1 | 65.8% | 1.3% | 8.5% | 65.5 | 33.0% | 49.3% |
| CH07_11_S13_L001_R1_001_val_1 | 8.4% | 1.5% | 12.5% | 40.0 | 37.7% | 30.7% |
| CH07_24_S14_L001_R1_001_val_1 | 7.6% | 1.5% | 13.5% | 43.4 | 40.6% | 33.8% |
| CH09_02_S15_L001_R1_001_val_1 | 69.4% | 1.8% | 15.4% | 44.9 | 31.1% | 44.2% |
| CH09_13_S16_L001_R1_001_val_1 | 48.7% | 1.7% | 15.6% | 36.8 | 68.2% | 51.1% |
| CH09_28_S17_L001_R1_001_val_1 | 69.0% | 1.7% | 7.5% | 57.2 | 32.6% | 50.7% |
| CH10_01_S18_L001_R1_001_val_1 | 71.8% | 1.4% | 7.2% | 50.2 | 28.2% | 52.1% |
| CH10_08_S19_L001_R1_001_val_1 | 32.9% | 1.8% | 26.5% | 36.3 | 26.0% | 38.5% |
| CH10_11_S20_L001_R1_001_val_1 | 68.6% | 1.5% | 12.0% | 50.5 | 31.1% | 48.9% |
Bismark
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.
Alignment Rates
Deduplication
Strand Alignment
Cytosine Methylation
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M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.
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