A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2023-05-31, 21:46 based on data in:
/scratch/lspencer/DuMOAR/aligned/mito/scratch/lspencer/DuMOAR/aligned/mito
General Statistics
Showing 20/20 rows and 6/8 columns.| Sample Name | % mCpG | % mCHG | % mCHH | M C's | % Dups | % Aligned |
|---|---|---|---|---|---|---|
| CH01_06_S1_R1 | 20.6% | 26.5% | 47.8% | 0.1 | 67.3% | 0.3% |
| CH01_14_S2_R1 | 20.6% | 25.7% | 46.8% | 0.2 | 77.1% | 0.6% |
| CH01_22_S3_R1 | 14.6% | 19.9% | 45.3% | 0.2 | 69.2% | 0.4% |
| CH01_38_S4_R1 | 24.8% | 31.2% | 48.3% | 0.1 | 71.8% | 0.5% |
| CH03_04_S5_R1 | 5.0% | 9.1% | 40.8% | 0.2 | 83.0% | 0.9% |
| CH03_15_S6_R1 | 4.4% | 8.7% | 37.5% | 0.2 | 70.2% | 0.5% |
| CH03_33_S7_R1 | 11.6% | 16.8% | 44.7% | 0.1 | 58.9% | 0.2% |
| CH05_01_S8_R1 | 16.2% | 25.0% | 48.2% | 0.2 | 84.0% | 0.8% |
| CH05_06_S9_R1 | 2.8% | 5.5% | 30.9% | 0.2 | 68.4% | 0.4% |
| CH05_21_S10_R1 | 12.2% | 18.7% | 47.1% | 0.1 | 71.8% | 0.4% |
| CH05_24_S11_R1 | 27.5% | 31.4% | 50.3% | 0.2 | 76.4% | 0.5% |
| CH07_06_S12_R1 | 13.0% | 19.7% | 45.4% | 0.2 | 66.5% | 0.4% |
| CH07_11_S13_R1 | 3.5% | 7.0% | 33.1% | 0.2 | 66.0% | 0.4% |
| CH07_24_S14_R1 | 5.1% | 9.7% | 37.4% | 0.3 | 72.9% | 0.5% |
| CH09_02_S15_R1 | 23.1% | 26.4% | 47.6% | 0.2 | 74.2% | 0.6% |
| CH09_13_S16_R1 | 10.4% | 13.6% | 41.0% | 0.1 | 86.5% | 0.4% |
| CH09_28_S17_R1 | 14.8% | 22.9% | 46.3% | 0.1 | 62.8% | 0.3% |
| CH10_01_S18_R1 | 19.2% | 26.0% | 47.6% | 0.1 | 58.9% | 0.4% |
| CH10_08_S19_R1 | 6.7% | 13.0% | 43.9% | 0.2 | 79.0% | 0.7% |
| CH10_11_S20_R1 | 21.9% | 26.6% | 46.1% | 0.2 | 70.6% | 0.5% |
Bismark
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.
Alignment Rates
Deduplication
Strand Alignment
Cytosine Methylation
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M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.
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