FastQCFastQC Report
Tue 12 Dec 2023
T021G_S188_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameT021G_S188_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2751967
Total Bases277.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGCCTGGGGGGGCTGATCTGGAGGGGGATAAATAAGGAAAGTAGGTTA48080.17471139733870356No Hit
GTTGCCTGGGAAAAAGAATAAGAGTGATGATGTATCCATCAAGAGTATAA42090.15294514796143993No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACG36930.13419492312226128No Hit
ACCAGGGAAATGTGGAAGGGCTGATGGCTACATCCTAGAAGGAAAAGAAC31500.11446358186707908No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30710.11159290790914282No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)