LOCUS NW_001253191 395045 bp DNA linear CON 27-JUL-2006 DEFINITION Apis mellifera linkage group 1 genomic contig, reference assembly (based on Amel_4.0 Group1.32), whole genome shotgun sequence. ACCESSION NW_001253191 VERSION NW_001253191.1 GI:110749203 KEYWORDS WGS. SOURCE Apis mellifera (honey bee) ORGANISM Apis mellifera Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Apis. COMMENT GENOME ANNOTATION REFSEQ: Features on this sequence have been produced for build 4 version 1 of the NCBI's genome annotation [see documentation]. The DNA sequence is from the whole genome assembly released by the Baylor College of Medicine Human Genome Sequencing Center as Amel_4.0, 10 March 2006 (see http://www.hgsc.bcm.tmc.edu/projects/honeybee/). The original whole genome shotgun project has the project accession AADG00000000.5. FEATURES Location/Qualifiers source 1..395045 /organism="Apis mellifera" /mol_type="genomic DNA" /strain="DH4" /db_xref="taxon:7460" gap 15697..16488 /estimated_length=792 gap 33780..33829 /estimated_length=50 gap 36567..36616 /estimated_length=50 STS 36914..37059 /db_xref="UniSTS:496079" gene complement(<41314..42282) /gene="LOC725278" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 34 Proteins" /db_xref="GeneID:725278" mRNA complement(<41314..42282) /gene="LOC725278" /product="similar to bab2 CG9102-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 34 Proteins" /transcript_id="XM_001121146.1" /db_xref="GI:110749172" /db_xref="GeneID:725278" CDS complement(<41314..42282) /gene="LOC725278" /codon_start=1 /product="similar to bab2 CG9102-PA" /protein_id="XP_001121146.1" /db_xref="GI:110749173" /db_xref="GeneID:725278" gap 45235..45284 /estimated_length=50 gap 80327..80816 /estimated_length=490 STS 86242..86449 /db_xref="UniSTS:468894" gap 90521..90570 /estimated_length=50 gene 91144..95539 /gene="LOC408598" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins" /db_xref="GeneID:408598" mRNA join(91144..91461,91544..91675,92508..92534,93494..93661, 93753..93824,93894..94018,94102..94226,94631..94807, 94929..95272,95363..95539) /gene="LOC408598" /product="similar to skiff CG30021-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins" /transcript_id="XM_392140.2" /db_xref="GI:66499702" /db_xref="GeneID:408598" CDS join(91144..91461,91544..91675,92508..92534,93494..93661, 93753..93824,93894..94018,94102..94226,94631..94807, 94929..95272,95363..95539) /gene="LOC408598" /codon_start=1 /product="similar to skiff CG30021-PA" /protein_id="XP_392140.2" /db_xref="GI:66499703" /db_xref="GeneID:408598" gene 99353..105343 /gene="LOC725347" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST" /db_xref="GeneID:725347" mRNA join(99353..99440,99825..99904,100322..100664, 100900..101274,101813..102003,103301..103430, 104176..104316,104396..104580,104922..105145, 105220..105343) /gene="LOC725347" /product="similar to ankyrin repeat domain 32" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST" /transcript_id="XM_001121206.1" /db_xref="GI:110749174" /db_xref="GeneID:725347" CDS join(99353..99440,99825..99904,100322..100664, 100900..101274,101813..102003,103301..103430, 104176..104316,104396..104580,104922..105145, 105220..105343) /gene="LOC725347" /codon_start=1 /product="similar to ankyrin repeat domain 32" /protein_id="XP_001121206.1" /db_xref="GI:110749175" /db_xref="GeneID:725347" gene complement(105904..108711) /gene="LOC410730" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins" /db_xref="GeneID:410730" mRNA complement(join(105904..106812,106865..106972, 107049..107413,107869..108016,108226..108711)) /gene="LOC410730" /product="similar to wurst CG9089-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins" /transcript_id="XM_394206.3" /db_xref="GI:110749176" /db_xref="GeneID:410730" CDS complement(join(106600..106812,106865..106972, 107049..107413,107869..108016,108226..108513)) /gene="LOC410730" /codon_start=1 /product="similar to wurst CG9089-PA" /protein_id="XP_394206.1" /db_xref="GI:48094544" /db_xref="GeneID:410730" gene 110434..112649 /gene="LOC408597" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins" /db_xref="GeneID:408597" mRNA join(110434..110685,111064..111365,111455..111997, 112143..112649) /gene="LOC408597" /product="similar to U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen)" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins" /transcript_id="XM_392139.3" /db_xref="GI:110749177" /db_xref="GeneID:408597" CDS join(110434..110685,111064..111365,111455..111997, 112143..112407) /gene="LOC408597" /codon_start=1 /product="similar to U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen)" /protein_id="XP_392139.1" /db_xref="GI:48094536" /db_xref="GeneID:408597" gene 113052..115690 /gene="LOC410729" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins" /db_xref="GeneID:410729" mRNA join(113052..113249,113318..113499,113681..113913, 113971..114106,114174..114240,114324..114531, 114606..114738,114813..114982,115054..115690) /gene="LOC410729" /product="similar to CG3734-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins" /transcript_id="XM_623673.2" /db_xref="GI:110749178" /db_xref="GeneID:410729" CDS join(113052..113249,113318..113499,113681..113913, 113971..114106,114174..114240,114324..114531, 114606..114738,114813..114982,115054..115163) /gene="LOC410729" /codon_start=1 /product="similar to CG3734-PA" /protein_id="XP_623676.2" /db_xref="GI:110749179" /db_xref="GeneID:410729" gene complement(115594..117288) /gene="LOC408596" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins" /db_xref="GeneID:408596" mRNA complement(join(115594..115799,115897..116110, 116300..116493,116737..116798,116855..117014, 117111..117288)) /gene="LOC408596" /product="similar to Cellular retinaldehyde binding protein CG10546-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins" /transcript_id="XM_392138.3" /db_xref="GI:110749180" /db_xref="GeneID:408596" CDS complement(join(115594..115799,115897..116110, 116300..116493,116737..116798,116855..117014, 117111..117288)) /gene="LOC408596" /codon_start=1 /product="similar to Cellular retinaldehyde binding protein CG10546-PA" /protein_id="XP_392138.3" /db_xref="GI:110749181" /db_xref="GeneID:408596" gene 123566..130015 /gene="LOC725576" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins" /db_xref="GeneID:725576" mRNA join(123566..123754,124184..124294,125135..125298, 125396..125547,127204..127427,127522..127655, 127746..128013,128964..129236,129308..129477, 129697..129806,129939..130015) /gene="LOC725576" /product="similar to CG12121-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins" /transcript_id="XM_001121399.1" /db_xref="GI:110749183" /db_xref="GeneID:725576" CDS join(123704..123754,124184..124294,125135..125298, 125396..125547,127204..127427,127522..127655, 127746..128013,128964..129236,129308..129477, 129697..129806,129939..130015) /gene="LOC725576" /codon_start=1 /product="similar to CG12121-PA" /protein_id="XP_001121399.1" /db_xref="GI:110749184" /db_xref="GeneID:725576" gap 144819..160230 /estimated_length=15412 gap 177671..177720 /estimated_length=50 gene 178989..209002 /gene="LOC551385" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:551385" mRNA join(178989..179052,204368..204392,205334..205382, 205486..205575,207877..207955,208878..209002) /gene="LOC551385" /product="similar to CG5907-PA, isoform A" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins" /transcript_id="XM_623780.1" /db_xref="GI:66499716" /db_xref="GeneID:551385" CDS join(178989..179052,204368..204392,205334..205382, 205486..205575,207877..207955,208878..209002) /gene="LOC551385" /codon_start=1 /product="similar to CG5907-PA, isoform A" /protein_id="XP_623783.1" /db_xref="GI:66499717" /db_xref="GeneID:551385" gap 215643..216092 /estimated_length=450 gap 235974..236265 /estimated_length=292 gene 265623..269178 /gene="LOC725683" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:725683" mRNA join(265623..265731,266759..267418,267523..267680, 267766..267924,268017..268286,268445..268696, 268834..269178) /gene="LOC725683" /product="similar to dusky CG9355-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins" /transcript_id="XM_001121500.1" /db_xref="GI:110749185" /db_xref="GeneID:725683" CDS join(265623..265731,266759..267418,267523..267680, 267766..267924,268017..268286,268445..268696, 268834..269178) /gene="LOC725683" /codon_start=1 /product="similar to dusky CG9355-PA" /protein_id="XP_001121500.1" /db_xref="GI:110749186" /db_xref="GeneID:725683" gene complement(269821..270523) /gene="LOC725721" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins" /pseudo /db_xref="GeneID:725721" mRNA complement(join(269821..270470,270502..270523)) /gene="LOC725721" /product="similar to CG9960-PA, isoform A" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins" /pseudo /transcript_id="XR_014924.1" /db_xref="GI:110749187" /db_xref="GeneID:725721" gene complement(270647..271288) /gene="LOC725747" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:725747" mRNA complement(join(270647..270971,271137..271288)) /gene="LOC725747" /product="similar to CG9958-PA, isoform A" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins" /transcript_id="XM_001121556.1" /db_xref="GI:110749188" /db_xref="GeneID:725747" CDS complement(join(270647..270971,271137..271288)) /gene="LOC725747" /codon_start=1 /product="similar to CG9958-PA, isoform A" /protein_id="XP_001121556.1" /db_xref="GI:110749189" /db_xref="GeneID:725747" gap 277350..277399 /estimated_length=50 gap 286941..287823 /estimated_length=883 gene complement(293586..351751) /gene="LOC725776" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:725776" mRNA complement(join(293586..293779,300730..300789, 301316..301734,301813..302291,351275..351751)) /gene="LOC725776" /product="similar to CG12029-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins" /transcript_id="XM_001121583.1" /db_xref="GI:110749190" /db_xref="GeneID:725776" CDS complement(join(293586..293779,300730..300789, 301316..301734,301813..302291,351275..351751)) /gene="LOC725776" /codon_start=1 /product="similar to CG12029-PA" /protein_id="XP_001121583.1" /db_xref="GI:110749191" /db_xref="GeneID:725776" gap 310814..311565 /estimated_length=752 gap 312805..312854 /estimated_length=50 gene complement(357891..360635) /gene="LOC551557" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST" /db_xref="GeneID:551557" mRNA complement(join(357891..357970,359209..359315, 359494..359602,359709..359839,359917..360182, 360337..360635)) /gene="LOC551557" /product="hypothetical LOC551557" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST" /transcript_id="XM_625253.2" /db_xref="GI:110749192" /db_xref="GeneID:551557" CDS complement(join(357891..357970,359209..359315, 359494..359602,359709..359839,359917..360182, 360337..360384)) /gene="LOC551557" /codon_start=1 /product="hypothetical protein" /protein_id="XP_625256.1" /db_xref="GI:66499720" /db_xref="GeneID:551557" gap 360694..361646 /estimated_length=953 gene 367137..370759 /gene="LOC413713" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins" /db_xref="GeneID:413713" mRNA join(367137..367451,368003..368231,368363..368705, 368774..368893,369011..369200,369592..369666, 369741..369798,369879..370006,370110..370313, 370421..370759) /gene="LOC413713" /product="similar to CG31915-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins" /transcript_id="XM_397154.3" /db_xref="GI:110749193" /db_xref="GeneID:413713" CDS join(367309..367451,368003..368231,368363..368705, 368774..368893,369011..369200,369592..369666, 369741..369798,369879..370006,370110..370313, 370421..370589) /gene="LOC413713" /codon_start=1 /product="similar to CG31915-PA" /protein_id="XP_397154.2" /db_xref="GI:66499725" /db_xref="GeneID:413713" gene 372041..374176 /gene="LOC410115" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 19 Proteins" /db_xref="GeneID:410115" mRNA join(372041..372257,372600..372780,372868..373182, 373312..373626,373711..373929,373997..374176) /gene="LOC410115" /product="similar to Actin-related protein 66B CG7558-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 19 Proteins" /transcript_id="XM_393599.3" /db_xref="GI:110749194" /db_xref="GeneID:410115" CDS join(372214..372257,372600..372780,372868..373182, 373312..373626,373711..373929,373997..374176) /gene="LOC410115" /codon_start=1 /product="similar to Actin-related protein 66B CG7558-PA" /protein_id="XP_393599.2" /db_xref="GI:66499731" /db_xref="GeneID:410115" gene complement(375339..378048) /gene="LOC410116" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins" /db_xref="GeneID:410116" mRNA complement(join(375339..375363,375481..375671, 375749..376042,376136..376445,376506..376759, 376895..377123,377210..377568,377725..377879, 377982..378048)) /gene="LOC410116" /product="similar to Protein FKSG26, transcript variant 1" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins" /transcript_id="XM_393600.3" /db_xref="GI:110749195" /db_xref="GeneID:410116" CDS complement(join(375339..375363,375481..375671, 375749..376042,376136..376445,376506..376759, 376895..377123,377210..377568,377725..377856)) /gene="LOC410116" /codon_start=1 /product="similar to Protein FKSG26 isoform 1" /protein_id="XP_393600.2" /db_xref="GI:66499735" /db_xref="GeneID:410116" gene 378362..380121 /gene="LOC726037" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins" /db_xref="GeneID:726037" mRNA join(378362..378559,378800..378859,378935..379057, 379136..379352,379430..379468,379559..379627, 379691..379890,380107..380121) /gene="LOC726037" /product="similar to CG3408-PA" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins" /transcript_id="XM_001121810.1" /db_xref="GI:110749196" /db_xref="GeneID:726037" CDS join(378470..378559,378800..378859,378935..379057, 379136..379352,379430..379468,379559..379627, 379691..379890,380107..380121) /gene="LOC726037" /codon_start=1 /product="similar to CG3408-PA" /protein_id="XP_001121810.1" /db_xref="GI:110749197" /db_xref="GeneID:726037" gene complement(380225..381671) /gene="LOC551729" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST" /db_xref="GeneID:551729" mRNA complement(join(380225..380237,380363..380868, 380999..381397,381554..381671)) /gene="LOC551729" /product="hypothetical LOC551729" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST" /transcript_id="XM_624117.2" /db_xref="GI:110749198" /db_xref="GeneID:551729" CDS complement(join(380225..380237,380363..380868, 380999..381397,381554..381616)) /gene="LOC551729" /codon_start=1 /product="hypothetical protein" /protein_id="XP_624120.2" /db_xref="GI:110749199" /db_xref="GeneID:551729" gap 381672..381725 /estimated_length=54 gene complement(384791..393499) /gene="LOC413907" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:413907" mRNA complement(join(384791..384940,385031..385276, 385388..385636,386181..386399,386511..386684, 387874..388075,388580..388710,389129..389248, 389446..389715,389790..389882,389975..390365, 391150..391397,391484..391614,391950..392010, 392243..392415,392491..392798,393312..393499)) /gene="LOC413907" /product="similar to Pyruvate dehydrogenase E1 component alpha subunit, testis-specific form, mitochondrial precursor (PDHE1-A type II)" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins" /transcript_id="XM_397346.3" /db_xref="GI:110749200" /db_xref="GeneID:413907" CDS complement(join(384791..384940,385031..385276, 385388..385636,386181..386399,386511..386684, 387874..388075,388580..388710,389129..389248, 389446..389715,389790..389882,389975..390365, 391150..391397,391484..391614,391950..392010, 392243..392415,392491..392798,393312..393499)) /gene="LOC413907" /codon_start=1 /product="similar to Pyruvate dehydrogenase E1 component alpha subunit, testis-specific form, mitochondrial precursor (PDHE1-A type II)" /protein_id="XP_397346.3" /db_xref="GI:110749201" /db_xref="GeneID:413907" STS 389225..389486 /db_xref="UniSTS:496080" gap 393500..393670 /estimated_length=171