Interior composition of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)

Entire chain composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)

Entire chain composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

Entire chain composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)

Entire chain compositino of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)

Screening coefficients gamma, local (Avbelj, 2000)

Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins

Screening coefficients gamma, non-local (Avbelj, 2000)

Slopes tripeptide, FDPB VFF neutral (Avbelj, 2000)

Slopes tripeptides, LD VFF neutral (Avbelj, 2000)

Slopes tripeptide, FDPB VFF noside (Avbelj, 2000)

Slopes tripeptide FDPB VFF all (Avbelj, 2000)

Slopes tripeptide FDPB PARSE neutral (Avbelj, 2000)

Slopes dekapeptide, FDPB VFF neutral (Avbelj, 2000)

Slopes proteins, FDPB VFF neutral (Avbelj, 2000)

Side-chain conformation by gaussian evolutionary method (Yang et al., 2002)

Yang, J.M., Tsai, C.H., Hwang, M.J., Tsai, H.K., Hwang, J.K. and Kao, C.Y.

GEM: a Gaussian Evolutionary Method for predicting protein side-chain conformations

Protein Sci. 11, 1897-1907 (2002) (Gly Ala missing)

Amphiphilicity index (Mitaku et al., 2002)

Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces

Volumes including the crystallographic waters using the ProtOr (Tsai et al., 1999)

Tsai, J., Taylor, R., Chothia, C. and Gerstein, M.

The packing density in proteins: standard radii and volumes

Volumes not including the crystallographic waters using the ProtOr (Tsai et al., 1999)

Electron-ion interaction potential values (Cosic, 1994)

Macromolecular bioactivity: is it resonant interaction between macromolecules?--Theory and applications

IEEE Trans Biomed Eng. 41, 1101-1114 (1994) (values are cited from Protein Eng. 15:193-203)