Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues

Optimized relative partition energies - method A (Miyazawa-Jernigan, 1999)

Optimized relative partition energies - method B (Miyazawa-Jernigan, 1999)

Optimized relative partition energies - method C (Miyazawa-Jernigan, 1999)

Optimized relative partition energies - method D (Miyazawa-Jernigan, 1999)

Hydrophobicity index (Engelman et al., 1986)

Engelman, D.M., Steitz, T.A. and Goldman, A.

Identifying Nonpolar Transbilayer Helices in Amino Acid Sequences of Membrane Proteins

Prediction of Protein Structure and the Principles of Protein Conformation

Plenum, New York 1989, page 457, Table XVII