Hydrophobicity index (Wolfenden et al., 1979)

Wolfenden, R.V., Cullis, P.M. and Southgate, C.C.F.

Water, protein folding, and the genetic code

Average internal preferences (Olsen, 1980)

Internal residue criteria for predicting three-dimensional protein structures

Hydrophobicity-related index (Kidera et al., 1985)

Kidera, A., Konishi, Y., Oka, M., Ooi, T. and Scheraga, A.

Statistical Analysis of the Physical Properties of the 20 Naturally Occuring Amino Acids

Apparent partition energies calculated from Wertz-Scheraga index (Guy, 1985)

Apparent partition energies calculated from Robson-Osguthorpe index (Guy, 1985)

Biophys. J. 47, 61-70 (1985) (Gly missing)

Apparent partition energies calculated from Janin index (Guy, 1985)

Apparent partition energies calculated from Chothia index (Guy, 1985)

Hydropathies of amino acid side chains, neutral form (Roseman, 1988)

Hydrophilicity of Polar Amino Acid Side-chains is Markedly Reduced by Flanking Peptide Bonds

Hydropathies of amino acid side chains, pi-values in pH 7.0 (Roseman, 1988)

Weights from the IFH scale (Jacobs-White, 1989)

The nature of the hydrophobic bonding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices

Hydrophobicity index, 3.0 pH (Cowan-Whittaker, 1990)

Hydrophobicity indices for amino acid residues as determined by high-performance liquid chromatography

Scaled side chain hydrophobicity values (Black-Mould, 1991)

Development of Hydrophobicity Parameters to Analyze Proteins Which Bear Post- or Cotranslational Modifications

Analytical Biochemistry 193, 72-82 (1991)

Hydrophobicity scale from native protein structures (Casari-Sippl, 1992)

Structure-derived Hydrophobic Potential. Hydrophobic Potential Derived from X-ray Structures of Globular Proteins is able to Identify Native Folds

Cornette, J.L., Cease, K.B., Margalit, H., Spouge, J.L., Berzofsky, J.A. and DeLisi, C.

Hydrophobicity Scales and Computational Techniques for Detecting Amphipathic Structures in Proteins

Relative partition energies derived by the Bethe approximation (Miyazawa-Jernigan, 1999)