In "Atlas of Protein Sequence and Structure", Vol.5, Suppl.3 (Dayhoff, M.O., ed.), National Biomedical Research Foundation, Washington, D.C., p.363 (1978)

Relative mutability (Dayhoff et al., 1978b)

Dayhoff, M.O., Schwartz, R.M. and Orcutt, B.C.

A model of evolutionary change in proteins

In "Atlas of Protein Sequence and Structure", Vol.5, Suppl.3 (Dayhoff, M.O., ed.), National Biomedical Research Foundation, Washington, D.C. pp. 345-352 (1978)

Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990)

Degli Esposti, M., Crimi, M. and Venturoli, G.

A critical evaluation of the hydropathy profile of membrane proteins

Average membrane preference: AMP07 (Degli Esposti et al., 1990)

Consensus normalized hydrophobicity scale (Eisenberg, 1984)

Three-dimensional structure of membrane and surface proteins

Ann. Rev. Biochem. 53, 595-623 (1984) Original references: Eisenberg, D., Weiss, R.M., Terwilliger, T.C. and Wilcox, W. Faraday Symp. Chem. Soc. 17, 109-120 (1982) Eisenberg, D., Weiss, R.M. and Terwilliger, T.C. The hydrophobic moment detects periodicity in protein hydrophobicity Proc. Natl. Acad. Sci. USA 81, 140-144 (1984)

Solvation free energy (Eisenberg-McLachlan, 1986)

Solvation energy in protein folding and binding

Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986)

Direction of hydrophobic moment (Eisenberg-McLachlan, 1986)

Nature 319, 199-203 (1986) (Gly Ala missing)

"Handbook of Biochemistry and Molecular Biology", 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976)

Hydrophobic parameter pi (Fauchere-Pliska, 1983)

Hydrophobic parameters pi of amino-acid side chains from the partitioning of N-acetyl-amino-acid amides

Graph shape index (Fauchere et al., 1988)

Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V.

Amino acid side chain parameters for correlation studies in biology and pharmacology

Int. J. Peptide Protein Res. 32, 269-278 (1988) Original reference: Kier, L.B. Quant. Struct. Act. Relat. 6, 117-122 (1987)

Smoothed upsilon steric parameter (Fauchere et al., 1988)