Graphics related functions for Bioconductor

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Documentation for package ‘geneplotter’ version 1.76.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

alongChrom	A function for plotting expression data from an ExpressionSet for a given chromosome.
amplicon.plot	Create an amplicon plot
buildACMainLabel	A function for plotting expression data from an ExpressionSet for a given chromosome.
cColor	A function for marking specific probes on a cPlot.
closeHtmlPage	Open and close an HTML file for writing.
cPlot	A plotting function for chromosomes.
cScale	A function for mapping chromosome length to a number of points.
cullACXPoints	A function for plotting expression data from an ExpressionSet for a given chromosome.
dChip.colors	A function to get the Red-Blue color scheme used by dChip
defMapFun	A function to plot a graph colored by expression data
dispACXaxis	A function for plotting expression data from an ExpressionSet for a given chromosome.
doACCumPlot	A function for plotting expression data from an ExpressionSet for a given chromosome.
doACImagePlot	A function for plotting expression data from an ExpressionSet for a given chromosome.
doACLocalPlot	A function for plotting expression data from an ExpressionSet for a given chromosome.
doACMatPlot	A function for plotting expression data from an ExpressionSet for a given chromosome.
emptyACPlot	A function for plotting expression data from an ExpressionSet for a given chromosome.
expressionSet133a	A small dataset for testing
fixACPhysPoints	A function for plotting expression data from an ExpressionSet for a given chromosome.
getACClosestPos	A function for plotting expression data from an ExpressionSet for a given chromosome.
getACDataEnv	A function for plotting expression data from an ExpressionSet for a given chromosome.
getACExprs	A function for plotting expression data from an ExpressionSet for a given chromosome.
getACGeneSyms	A function for plotting expression data from an ExpressionSet for a given chromosome.
getACPlotLabs	A function for plotting expression data from an ExpressionSet for a given chromosome.
getACStrandVals	A function for plotting expression data from an ExpressionSet for a given chromosome.
GetColor	A function to get the Red-Blue color scheme used by dChip
getPlotExpressionColors	A function to plot a graph colored by expression data
greenred.colors	A function to get the Red-Blue color scheme used by dChip
groupedHeatmap	Heatmap of a matrix with grouped rows and columns
highlightACDups	A function for plotting expression data from an ExpressionSet for a given chromosome.
histStack	Stacked histogram
imageMap	Write an HTML IMG tag together with a MAP image map.
imageMap-method	Write an HTML IMG tag together with a MAP image map.
imageMap-methods	Write an HTML IMG tag together with a MAP image map.
IMCAEntrezLink	A function to plot a graph colored by expression data
limitACXRange	A function for plotting expression data from an ExpressionSet for a given chromosome.
make.chromOrd	Make a chromOrd object
Makesense	Produce Smoothed Sense/Anti-sense For All Chromosomes
Makesense-method	Produce Smoothed Sense/Anti-sense For All Chromosomes
multidensity	Multiple empirical cumulative distribution functions (ecdf) and densities
multidensity.formula	Multiple empirical cumulative distribution functions (ecdf) and densities
multidensity.list	Multiple empirical cumulative distribution functions (ecdf) and densities
multidensity.matrix	Multiple empirical cumulative distribution functions (ecdf) and densities
multiecdf	Multiple empirical cumulative distribution functions (ecdf) and densities
multiecdf.formula	Multiple empirical cumulative distribution functions (ecdf) and densities
multiecdf.list	Multiple empirical cumulative distribution functions (ecdf) and densities
multiecdf.matrix	Multiple empirical cumulative distribution functions (ecdf) and densities
openHtmlPage	Open and close an HTML file for writing.
plotChr	Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph	A function to plot a graph colored by expression data
plotMA	Generate an MA plot
plotMA-method	Generate an MA plot
plotMA-methods	Generate an MA plot
saveeps	Save the contents of the current graphics device to a file
savepdf	Save the contents of the current graphics device to a file
savepng	Save the contents of the current graphics device to a file
savetiff	Save the contents of the current graphics device to a file
scaleACData	A function for plotting expression data from an ExpressionSet for a given chromosome.