package	*	version	date	source
acepack		1.4.1	2016-10-29	CRAN (R 3.5.0)
annotate		1.57.2	2017-12-27	Bioconductor
AnnotationDbi		1.41.4	2017-12-27	Bioconductor
assertthat		0.2.0	2017-04-11	CRAN (R 3.5.0)
backports		1.1.2	2017-12-13	CRAN (R 3.5.0)
base	*	3.5.0	2017-12-27	local
base64enc		0.1-3	2015-07-28	CRAN (R 3.5.0)
bindr		0.1.1	2018-03-13	CRAN (R 3.5.0)
bindrcpp		0.2	2017-06-17	CRAN (R 3.5.0)
Biobase	*	2.39.2	2018-02-03	Bioconductor
BiocGenerics	*	0.25.3	2018-03-20	Bioconductor
BiocInstaller	*	1.29.4	2018-01-28	Bioconductor
BiocParallel	*	1.13.1	2018-01-17	Bioconductor
bit		1.1-12	2014-04-09	CRAN (R 3.5.0)
bit64		0.9-7	2017-05-08	CRAN (R 3.5.0)
bitops		1.0-6	2013-08-17	CRAN (R 3.5.0)
blob		1.1.0	2017-06-17	CRAN (R 3.5.0)
blockmodeling	*	0.1.9	2017-07-03	CRAN (R 3.5.0)
bsseq	*	1.15.1	2018-03-17	Bioconductor
caTools		1.17.1	2014-09-10	CRAN (R 3.5.0)
checkmate		1.8.5	2017-10-24	CRAN (R 3.5.0)
cluster		2.0.6	2017-03-10	CRAN (R 3.5.0)
colorspace		1.3-2	2016-12-14	CRAN (R 3.5.0)
compiler		3.5.0	2017-12-27	local
cowplot	*	0.9.2	2017-12-17	CRAN (R 3.5.0)
data.table		1.10.4-3	2017-10-27	CRAN (R 3.5.0)
datasets	*	3.5.0	2017-12-27	local
DBI		0.8	2018-03-02	CRAN (R 3.5.0)
DelayedArray	*	0.5.22	2018-03-17	Bioconductor
DESeq2	*	1.19.40	2018-03-20	Bioconductor
devtools	*	1.13.5	2018-02-18	CRAN (R 3.5.0)
digest		0.6.13	2017-12-14	CRAN (R 3.5.0)
dplyr		0.7.4	2017-09-28	CRAN (R 3.5.0)
DSS	*	2.27.0	2018-03-17	Bioconductor
DT		0.4	2018-01-30	CRAN (R 3.5.0)
EBSeq	*	1.19.0	2018-03-17	Bioconductor
edgeR	*	3.21.9	2018-03-20	Bioconductor
evaluate		0.10.1	2017-06-24	CRAN (R 3.5.0)
foreign		0.8-70	2017-11-28	CRAN (R 3.5.0)
Formula		1.2-2	2017-07-10	CRAN (R 3.5.0)
gdata		2.18.0	2017-06-06	CRAN (R 3.5.0)
genefilter		1.61.1	2018-02-03	Bioconductor
geneplotter		1.57.0	2017-12-27	Bioconductor
GenomeInfoDb	*	1.15.5	2018-03-20	Bioconductor
GenomeInfoDbData		1.1.0	2017-12-27	Bioconductor
GenomicRanges	*	1.31.22	2018-03-20	Bioconductor
ggplot2	*	2.2.1	2016-12-30	CRAN (R 3.5.0)
glue		1.2.0	2017-10-29	CRAN (R 3.5.0)
gplots	*	3.0.1	2016-03-30	CRAN (R 3.5.0)
graphics	*	3.5.0	2017-12-27	local
grDevices	*	3.5.0	2017-12-27	local
grid		3.5.0	2017-12-27	local
gridExtra		2.3	2017-09-09	CRAN (R 3.5.0)
gtable		0.2.0	2016-02-26	CRAN (R 3.5.0)
gtools		3.5.0	2015-05-29	CRAN (R 3.5.0)
Hmisc		4.1-1	2018-01-03	CRAN (R 3.5.0)
htmlTable		1.11.2	2018-01-20	CRAN (R 3.5.0)
htmltools		0.3.6	2017-04-28	CRAN (R 3.5.0)
htmlwidgets		1.0	2018-01-20	CRAN (R 3.5.0)
httpuv		1.3.6.2	2018-03-02	CRAN (R 3.5.0)
iCOBRA	*	1.7.0	2017-12-28	Bioconductor
impute	*	1.53.0	2018-03-17	Bioconductor
IRanges	*	2.13.28	2018-03-20	Bioconductor
KernSmooth		2.23-15	2015-06-29	CRAN (R 3.5.0)
knitr		1.17	2017-08-10	CRAN (R 3.5.0)
labeling		0.3	2014-08-23	CRAN (R 3.5.0)
lattice		0.20-35	2017-03-25	CRAN (R 3.5.0)
latticeExtra		0.6-28	2016-02-09	CRAN (R 3.5.0)
lazyeval		0.2.1	2017-10-29	CRAN (R 3.5.0)
limma	*	3.35.13	2018-03-20	Bioconductor
locfit		1.5-9.1	2013-04-20	CRAN (R 3.5.0)
magrittr	*	1.5	2014-11-22	CRAN (R 3.5.0)
Matrix		1.2-12	2017-11-20	CRAN (R 3.5.0)
matrixStats	*	0.53.1	2018-02-11	CRAN (R 3.5.0)
memoise		1.1.0	2017-04-21	CRAN (R 3.5.0)
methods	*	3.5.0	2017-12-27	local
mime		0.5	2016-07-07	CRAN (R 3.5.0)
munsell		0.4.3	2016-02-13	CRAN (R 3.5.0)
nnet		7.3-12	2016-02-02	CRAN (R 3.5.0)
parallel	*	3.5.0	2017-12-27	local
permute		0.9-4	2016-09-09	CRAN (R 3.5.0)
pillar		1.1.0	2018-01-14	CRAN (R 3.5.0)
pkgconfig		2.0.1	2017-03-21	CRAN (R 3.5.0)
plyr		1.8.4	2016-06-08	CRAN (R 3.5.0)
R.methodsS3		1.7.1	2016-02-16	CRAN (R 3.5.0)
R.oo		1.21.0	2016-11-01	CRAN (R 3.5.0)
R.utils		2.6.0	2017-11-05	CRAN (R 3.5.0)
R6		2.2.2	2017-06-17	CRAN (R 3.5.0)
RColorBrewer		1.1-2	2014-12-07	CRAN (R 3.5.0)
Rcpp		0.12.14	2017-11-23	CRAN (R 3.5.0)
RCurl		1.95-4.10	2018-01-04	CRAN (R 3.5.0)
reshape2		1.4.3	2017-12-11	CRAN (R 3.5.0)
rlang		0.1.6	2017-12-21	CRAN (R 3.5.0)
rmarkdown	*	1.9	2018-03-01	CRAN (R 3.5.0)
ROCR		1.0-7	2015-03-26	CRAN (R 3.5.0)
rpart		4.1-13	2018-02-23	CRAN (R 3.5.0)
rprojroot		1.3-1	2017-12-18	CRAN (R 3.5.0)
RSQLite		2.0	2017-06-19	CRAN (R 3.5.0)
rstudioapi		0.7	2017-09-07	CRAN (R 3.5.0)
S4Vectors	*	0.17.37	2018-03-20	Bioconductor
samr	*	2.0	2011-06-29	CRAN (R 3.5.0)
scales		0.5.0	2017-08-24	CRAN (R 3.5.0)
shiny		1.0.5	2017-08-23	CRAN (R 3.5.0)
shinyBS		0.61	2015-03-31	CRAN (R 3.5.0)
shinydashboard		0.6.1	2017-06-14	CRAN (R 3.5.0)
splines	*	3.5.0	2017-12-27	local
stats	*	3.5.0	2017-12-27	local
stats4	*	3.5.0	2017-12-27	local
stringi		1.1.6	2017-11-17	CRAN (R 3.5.0)
stringr		1.2.0	2017-02-18	CRAN (R 3.5.0)
SummarizedExperiment	*	1.9.15	2018-03-20	Bioconductor
survival		2.41-3	2017-04-04	CRAN (R 3.5.0)
testthat	*	2.0.0	2017-12-13	CRAN (R 3.5.0)
tibble		1.4.2	2018-01-22	CRAN (R 3.5.0)
tools		3.5.0	2017-12-27	local
UpSetR		1.3.3	2017-03-21	CRAN (R 3.5.0)
utils	*	3.5.0	2017-12-27	local
withr		2.1.2	2018-03-15	CRAN (R 3.5.0)
XML		3.98-1.10	2018-02-19	CRAN (R 3.5.0)
xtable		1.8-2	2016-02-05	CRAN (R 3.5.0)
XVector		0.19.9	2018-03-20	Bioconductor
zlibbioc		1.25.0	2017-12-27	Bioconductor