---
title: "01-download-data"
output: html_document
date: "2023-04-07"
---
load packages
```{r}
library(knitr)
```


move files into one folder
```{bash}
cd /Users/hailaschultz/GitHub/haila-ZoopMetabarcoding/
ls
```

```{bash}
cd ../data
find . -name '*.gz' -exec mv {} ../data/fastq-files/ \;
```


create checksums file for all fastq files in data folder
```{bash}
cd /Users/hailaschultz/GitHub/haila-ZoopMetabarcoding/data/
pwd
ls
shasum ../data/fastq-files/*.gz > fastq_checksums.sha
cat fastq_checksums.sha
```

#check if files match original
```{bash}
cd ../data
shasum -c fastq_checksums.sha
```



