# tidytree 0.4.2 + fixed the `dots` issue of `left_join` (2022-12-16, Fri, #30, #31) # tidytree 0.4.1 + update citation with the ggtree imeta paper (2022-08-13, Sat) # tidytree 0.4.0 + update citation with the tree data book (2022-08-13, Sat) # tidytree 0.3.9 + update package startup message (2022-03-04, Fri) # tidytree 0.3.8 + add the CRC book in startup message (2022-02-17, Thu) # tidytree 0.3.7 + update startup message to randomly print two citation items of the ggtree package suite (2022-01-10, Mon) # tidytree 0.3.6 + use `yulab.utils::str_wrap` to print tree (2021-10-09, Sat) # tidytree 0.3.5 + add `select`, `filter`, `mutate`, `left_join`, `unnest`, `pull` and `rename` verbs for `treedata` object (2021-08-22, Sun; @xiangpin, #19) + update `print` and `show` methods for `treedata` - with `options(show_data_for_treedata=TRUE)` to control whether show associated data (2021-08-20, Fri; @xiangpin, #18) # tidytree 0.3.4 + implement `merge` method for `tbl_tree` object (2020-07-03, Fri) - + remove mutate_, filter_ and group_by_ according to the change of dplyr (v=1.0.0) (2020-04-09, Thu) # tidytree 0.3.3 + remove `data_frame` according to the change of tibble (v=3.0.0) # tidytree 0.3.2 + use `tibble` instead of `data_frame` as it was deprecated in tibble (v=3.0.0) (2020-04-02, Thu) + compatible with dplyr v=1.0.0 (2020-03-12, Thu) - - # tidytree 0.3.1 + `groupOTU`: set group from 0 to NA if only root node is in group of 0 (2019-11-25, Mon) # tidytree 0.3.0 + `offspring` supports a vector of node ids (2019-11-21, Thu) + bug fixed of `nodelab` + `filter` and `select` methods for `ggtree` object (2019-10-31, Thu) # tidytree 0.2.9 + `offsprint(tip, self_include=TRUE)` will return the input tip (2019-10-06, Sun) # tidytree 0.2.8 + update `offspring` to compatible with missing nodes, e.g. for tree after `ggtree::collapse` (2019-09-16, Mon) # tidytree 0.2.7 + allow calling `MRCA` with only one node and will return the node itself (2019-08-30, Fri) # tidytree 0.2.6 + `nodeid` and `nodelab` methods for converting from label to node number and vice versa (2019-08-09, Fri) + allow determine MRCA of a vector of tips (2019-08-08, Thu) # tidytree 0.2.5 + convert elements of roxygen documentation to markdown (2019-05-05, Thu) # tidytree 0.2.4 + call `child.tbl_tree` instead of `child` in `offspring`, (2019-02-26, Tue) so that it works more robust for `data.frame`. # tidytree 0.2.3 + more parameter for `offspring` (2019-01-28, Mon) # tidytree 0.2.2 + mv vignette to [treedata-book](https://yulab-smu.top/treedata-book/) (2019-01-10, Thu) # tidytree 0.2.1 + `mutate.tbl_tree` method (2018-12-19, Wed) - + bug fixed in `child` - # tidytree 0.2.0 + compatible with `tibble` v = 2.0.0 (2018-11-29, Thu) - change `as_data_frame` method to `as_tibble` since `as_data_frame` was deprecated in `tibble` and not exported as generics # tidytree 0.1.9 + `as_data_frame.phylo` works with `phylo$root.edge` (2018-06-13, Wed) # tidytree 0.1.8 + force `get_tree_data(treedata)$node` to be integer (2018-04-19, Thu) # tidytree 0.1.7 + `get.data`, `[` and `[[` methods (2018-02-26, Mon)