A universal enrichment tool for interpreting omics data
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Documentation for package ‘clusterProfiler’ version 4.6.2
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| clusterProfiler-package | statistical analysis and visualization of functional profiles for genes and gene clusters |
| bitr | bitr |
| bitr_kegg | bitr_kegg |
| browseKEGG | browseKEGG |
| buildGOmap | buildGOmap |
| clusterProfiler | statistical analysis and visualization of functional profiles for genes and gene clusters |
| compareCluster | Compare gene clusters functional profile |
| DataSet | Datasets gcSample contains a sample of gene clusters. |
| DE_GSE8057 | Datasets gcSample contains a sample of gene clusters. |
| download_KEGG | download_KEGG |
| dropGO | dropGO |
| enrichDAVID | enrichDAVID |
| enricher | enricher |
| enrichGO | GO Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment GO categories after FDR control. |
| enrichKEGG | KEGG Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG categories with FDR control. |
| enrichMKEGG | KEGG Module Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG Module categories with FDR control. |
| enrichWP | enrichWP |
| gcSample | Datasets gcSample contains a sample of gene clusters. |
| get_wp_organisms | get_wp_organism |
| Gff2GeneTable | Gff2GeneTable |
| go2ont | go2ont |
| go2term | go2term |
| gofilter | gofilter |
| groupGO | Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level. |
| groupGOResult-class | Class "groupGOResult" This class represents the result of functional Profiles of a set of gene at specific GO level. |
| GSEA | GSEA |
| gseGO | gseGO |
| gseKEGG | gseKEGG |
| gseMKEGG | gseMKEGG |
| gseWP | gseWP |
| gson_GO | gson_KEGG |
| gson_KEGG | gson_KEGG |
| gson_KEGG_mapper | Build KEGG annotation for novel species using KEGG Mapper |
| gson_WP | gson_WP |
| idType | idType |
| kegg_species | Datasets gcSample contains a sample of gene clusters. |
| ko2name | ko2name |
| merge_result | merge_result |
| parse_gff | parse_gff |
| plotGOgraph | plotGOgraph |
| search_kegg_organism | search_kegg_organism |
| show-method | Class "groupGOResult" This class represents the result of functional Profiles of a set of gene at specific GO level. |
| simplify | simplify method |
| simplify-method | simplify method |
| uniprot_get | uniprot_get |