DataSet                 Datasets gcSample contains a sample of gene
                        clusters.
GSEA                    GSEA
Gff2GeneTable           Gff2GeneTable
bitr                    bitr
bitr_kegg               bitr_kegg
browseKEGG              browseKEGG
buildGOmap              buildGOmap
clusterProfiler-package
                        statistical analysis and visualization of
                        functional profiles for genes and gene clusters
compareCluster          Compare gene clusters functional profile
download_KEGG           download_KEGG
dropGO                  dropGO
enrichDAVID             enrichDAVID
enrichGO                GO Enrichment Analysis of a gene set. Given a
                        vector of genes, this function will return the
                        enrichment GO categories after FDR control.
enrichKEGG              KEGG Enrichment Analysis of a gene set. Given a
                        vector of genes, this function will return the
                        enrichment KEGG categories with FDR control.
enrichMKEGG             KEGG Module Enrichment Analysis of a gene set.
                        Given a vector of genes, this function will
                        return the enrichment KEGG Module categories
                        with FDR control.
enrichWP                enrichWP
enricher                enricher
get_wp_organisms        get_wp_organism
go2ont                  go2ont
go2term                 go2term
gofilter                gofilter
groupGO                 Functional Profile of a gene set at specific GO
                        level. Given a vector of genes, this function
                        will return the GO profile at a specific level.
groupGOResult-class     Class "groupGOResult" This class represents the
                        result of functional Profiles of a set of gene
                        at specific GO level.
gseGO                   gseGO
gseKEGG                 gseKEGG
gseMKEGG                gseMKEGG
gseWP                   gseWP
gson_GO                 gson_KEGG
gson_KEGG               gson_KEGG
gson_KEGG_mapper        Build KEGG annotation for novel species using
                        KEGG Mapper
gson_WP                 gson_WP
idType                  idType
ko2name                 ko2name
merge_result            merge_result
parse_gff               parse_gff
plotGOgraph             plotGOgraph
search_kegg_organism    search_kegg_organism
simplify                simplify method
uniprot_get             uniprot_get