Check whether an annotation file contains outlier lines
Download a NCBI Database to Your Local Hard Drive
Download all elements of an NCBI databse
Retrieve All Available Attributes for a Specific Dataset
Retrieve a Collection: Genome, Proteome, CDS, RNA, GFF, Repeat Masker, AssemblyStats
Retrieve a Collection: Genome, Proteome, CDS, RNA, GFF, Repeat Masker, AssemblyStats of multiple species
Retrieve All Available Datasets for a BioMart Database
Helper function for retrieving biological sequence files from ENSEMBL
Helper function for retrieving gff files from ENSEMBL
Retrieve All Available Filters for a Specific Dataset
Retrieve available groups for a kingdom of life (only available for NCBI RefSeq and NCBI Genbank)
Retrieve and summarise the assembly_summary.txt files from NCBI for all kingdoms
Retrieve information about available Ensembl Biomart databases
Retrieve annotation *.gff files for metagenomes from NCBI Genbank
Retrieve the assembly_summary.txt file from NCBI genbank metagenomes
Retrieve available database releases or versions of ENSEMBL
Helper function to retrieve the assembly_summary.txt file from NCBI
Retrieve a List of Available NCBI Databases for Download
List All Available Genomes either by kingdom, group, or subgroup
List number of available genomes in each taxonomic group
List number of available genomes in each kingdom of life
List available metagenomes on NCBI Genbank
Perform Meta-Genome Retrieval of all organisms in all kingdoms of life
Retrieve Ensembl Biomart attributes for a query organism
Retrieve Ensembl Biomart marts and datasets for a query organism
Retrieve Ensembl Biomart filters for a qyery organism
Import CDS as Biostrings or data.table object
Import Genome Assembly as Biostrings or data.table object
Import Proteome as Biostrings or data.table object
Import RNA as Biostrings or data.table object
Retrieve All Organism Names Stored on refseq
Retrieve summary statistics for a coding sequence (CDS) file
Retrieve summary statistics for a genome assembly file