GOSemSim-package Gene Ontology-based Sematic Similarity Measures GOSemSimDATA-class Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement clusterSim Semantic Similarity Between Two Gene Clusters combineScores combining similarity matrix to similarity score geneSim Semantic Similarity Between two Genes goSim Semantic Similarity Between Two GO Terms go_term_table Information content of GO terms godata godata infoContentMethod information content based methods load_OrgDb load_OrgDb mclusterSim Pairwise Semantic Similarities for a List of Gene Clusters mgeneSim Pairwise Semantic Similarity for a List of Genes mgoSim Semantic Similarity Between two GO terms lists tcss_cutoff determine the topological cutoff for TCSS method termSim termSim wangMethod_internal wangMethod