# DOSE 3.23.3 + replace `DO.db` to `HDO.db` (2022-10-7, Fri) + add values of `organism`, `keytype` and `setType` for `GSEA_internal()` (2022-09-21, Wed) + add values of `organism`, `keytype` and `ontology` for `enricher_internal()` (2022-09-21, Wed) + move `inst/extdata/parse-obo.R` to `HDO.db` package (2022-08-29, Mon) + rename `qvalues` to `qvalue` in `gseaResult` object (2022-08-29, Mon) # DOSE 3.23.2 + Support `GSON` object in `GSEA_internal()` (2022-06-08, Wed) # DOSE 3.23.1 + Support `GSON` object in `enricher_internal()` (2022-06-06, Mon) # DOSE 3.22.0 + Bioconductor 3.15 release # DOSE 3.21.2 + enable `setReadable` for compareCluster(GSEA algorithm) result(2021-12-13, Mon) + update the default order of GSEA result (2021-12-09, Thu) - if p.adjust is identical, sorted by `abs(NES)` # DOSE 3.21.1 + upate DisGeNET and NCG data (2021-11-14, Sun) - DisGeNET v7: 21671 genes, 30170 diseases and 1134942 gene-disease associations - 194515 variants, 14155 diseases and 369554 variant-disease associations - NCG v7: 3177 cancer genes, 130 diseases and 6095 gene-disease associations # DOSE 3.20.0 + Bioconductor 3.14 release # DOSE 3.19.4 + update `clusterProfiler` citation (2021-09-30, Thu) + upate error message of `enricher_internal` (2021-9-3, Fri) # DOSE 3.19.3 + upate DisGeNET and NCG data (2021-8-16, Mon) # DOSE 3.19.2 + bug fixed, change 'is.na(path2name)' to 'all(is.na(path2name))' (2021-06-21, Mon) # DOSE 3.19.1 + add `dr` slot to `compareClusterResult`, `enrichRestul` and `gseaResult`(2021-5-21, Fri) # DOSE 3.18 + Bioconductor 3.13 release # DOSE 3.17 + support setting seed for fgsea method if e.g. `gseGO(seed = TRUE)` (2020-10-28, Wed) - # DOSE 3.16.0 + Bioconductor 3.12 release (2020-10-28, Wed) # DOSE 3.15.4 + update `setReadable` and `geneInCategory` methods for `compareClusterResult` object (2020-10-12, Mon) # DOSE 3.15.3 + allow passing additional parameters to fgsea (2020-10-09, Fri) - + add `termsim` and `method` slots to `compareClusterResult`, `enrichRestul` and `gseaResult` - # DOSE 3.15.2 + update [NCG](http://ncg.kcl.ac.uk/download.php#) and [DGN](https://www.disgenet.org/downloads) data (2020-10-09, Thu) # DOSE 3.14.0 + Bioconductor 3.11 release # DOSE 3.13.2 + fixed issue caused by R v4.0.0 (2020-03-12, Thu) - length > 1 in coercion to logical - # DOSE 3.13.1 + remove `S4Vectors` dependencies (2019-12-19, Thu) + extend `setReadable` to support `compareClusterResult` (2019-12-02, Mon) + add `gene2Symbol`, `keytype` and `readable` slots for `compareClusterResult` + move `compareClusterResult` class definition from `clusterProfiler` (2019-11-01, Fri) # DOSE 3.12.0 + Bioconductor 3.10 release # DOSE 3.11.2 + ignore `universe` and print a message if users passing accidentally passing wrong input (2019-10-24, Thu) - + gene with minimal ES value (NES < 0) will be reported in `core_enrichment` (2019-07-31, Wed) # DOSE 3.11.1 + `build_Anno` now compatible with `tibble` (2019-05-28, Tue) # DOSE 3.10.0 + Bioconductor 3.9 release # DOSE 3.9.4 + export `parse_ratio` (2019-03-29, Tue) # DOSE 3.9.4 + bug fixed of `get_enriched` (2019-01-14, Mon) - # DOSE 3.9.2 + mv enrichment vignettes to [clusterProfiler-book](https://yulab-smu.github.io/clusterProfiler-book) (2019-01-10, Thu) # DOSE 3.9.1 + `asis` parameter in `[.enrichResult` and `[.gseaResult` (2018-12-24, Mon) - # DOSE 3.8 + Bioconductor 3.8 release # DOSE 3.7.1 + S3 accessor methods only return enriched terms. (2018-06-20, Wed)