Manipulation of SQLite-based annotations in Bioconductor
Implements a user-friendly interface for querying SQLite-based annotation data packages.
Hervé Pagès, Marc Carlson, Seth Falcon, Nianhua Li
R (>= 2.7.0), methods, utils, stats4, BiocGenerics (>=
0.29.2), Biobase (>= 1.17.0), IRanges
DBI, RSQLite, S4Vectors (>= 0.9.25), stats, KEGGREST
hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, reactome.db,
AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr
00RTobjs.R AllGenerics.R AllClasses.R unlist2.R utils.R SQL.R
FlatBimap.R AnnDbObj-lowAPI.R Bimap.R GOTerms.R
BimapFormatting.R Bimap-envirAPI.R flatten.R
methods-AnnotationDb.R methods-SQLiteConnection.R
methods-geneCentricDbs.R methods-geneCentricDbs-keys.R
methods-ReactomeDb.R methods-OrthologyDb.R loadDb.R
createAnnObjs-utils.R createAnnObjs.NCBIORG_DBs.R
createAnnObjs.NCBICHIP_DBs.R createAnnObjs.ORGANISM_DB.R
createAnnObjs.YEASTCHIP_DB.R createAnnObjs.COELICOLOR_DB.R
createAnnObjs.ARABIDOPSISCHIP_DB.R createAnnObjs.MALARIA_DB.R
createAnnObjs.YEAST_DB.R createAnnObjs.YEASTNCBI_DB.R
createAnnObjs.ARABIDOPSIS_DB.R createAnnObjs.GO_DB.R
createAnnObjs.KEGG_DB.R createAnnObjs.PFAM_DB.R
AnnDbPkg-templates-common.R AnnDbPkg-checker.R
print.probetable.R makeMap.R inpIDMapper.R
test_AnnotationDbi_package.R