FastQCFastQC Report
Thu 20 Apr 2023
SRR19782039.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19782039.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5564824
Sequences flagged as poor quality0
Sequence length35-76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACATGAGCTGAGTTCAGAACGGCGTGAGCTAGTTCAGTTTCTATCCTCTTTTTGAAATGAGCTAATTTTGTACG209510.37648989437940894No Hit
CATGAGCTGAGTTCAGAACGGCGTGAGCTAGTTCAGTTTCTATCCTCTTTTTGAAATGAGCTAATTTTGTACGAA134660.24198429276469482No Hit
ACATGAGCTGAGTTCAGAACGGCGTGAGCTAGTTCAGTTTCTATCCTCTTTTTGAAATGAGCTAATTTTGTACGA100790.18111983415827707No Hit
TGAGCTGAGTTCAGAACGGCGTGAGCTAGTTCAGTTTCTATCCTCTTTTT80880.14534152382896567No Hit
TGGTGGGTCTGTTCGCCCTTTAAAATCTAACATGAGCTGAGTTCAGAACG80480.14462272301873338No Hit
GTTCGCCCTTTAAAATCTAACATGAGCTGAGTTCAGAACGGCGTGAGCTAGTTCAGTTTCTATCCTCTTTTTGAA79430.14273587089187367No Hit
TAACATGAGCTGAGTTCAGAACGGCGTGAGCTAGTTCAGTTTCTATCCTC70820.127263683451624No Hit
GATGGTGGGTCTGTTCGCCCTTTAAAATCTAACATGAGCTGAGTTCAGAA63920.11486436947511727No Hit
TTCGCCCTTTAAAATCTAACATGAGCTGAGTTCAGAACGGCGTGAGCTAG61020.1096530636009333No Hit
TGGGTCTGTTCGCCCTTTAAAATCTAACATGAGCTGAGTTCAGAACGGCG57640.1035791967544706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)