FastQCFastQC Report
Thu 20 Apr 2023
SRR16771870_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16771870_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19661720
Sequences flagged as poor quality0
Sequence length35-75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACGGTACTTGTCCGCTATCGGACTCGTGCCGGTATTTAGCTTTAGATGGAGTTTACCACCCGCTTTGGGCT418980.21309427659431623No Hit
CCTATATCTTAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGAACCCTTCTCCCCTTCAGTCTTCAA409610.20832867114372494No Hit
GTCCGTGTTTGGCACCTTAACCGAACGTTTGGTTCATCCCACAGCGCCAGTTCTGCTTACCAAAAGTGGCCCACT379050.19278577866025962No Hit
GCTCAATCTCGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGCGCCGACGCAAATGGGGATCGGCGAACT373020.18971890556879054No Hit
GTCCTTTCGTACAAAATTAGCTCATTTTTAAAAGAGGATAGAAACTGAACTAGCTCACGCCGTTCTGAACTCAGC357610.1818813410017028No Hit
GCCGTTCTGAACTCAGCTCATGTTAGATTTTAAAGGGCGAACAGACCCACCATCAGAAGCTTCTACGCCTCTAGG355020.180564060519629No Hit
CTATATCTTAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGAACCCTTCTCCCCTTCAGTCTTCAAAGT316470.16095743403934143No Hit
CTTTCGTACAAAATTAGCTCATTTTTAAAAGAGGATAGAAACTGAACTAGCTCACGCCGTTCTGAACTCAGCTC311870.1586178625267779No Hit
ACGACTTTTACTTCCTCTAGGCGTTCAAGTTTGCGCGTCTTTTCGGCACACCGGTACGGTTGTTGCCAACCATTT306840.15605959193804No Hit
GGCAGACATTTGAAAGATACGTCGCCGGCGCGAGGCCGTGCGATCAGCACAAAGTTATCCAGTCTCACCAATCCG291120.1480643605951056No Hit
GCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCC281370.14310548619347646No Hit
CCCGACTCCAAGGACGCTCTGAGGCACGACGCCAGGTGCCGGTAAAGGCCTGACACCCGCTCTGGGAGAGGCCCC259320.13189080100825362No Hit
GCCACGCTTTCACGGTCTGTATTCGTACTGAAAATCAAAATCAAGTGAGCTTTTGCCCTTTTACTCTACGTGAGG232790.118397576610795No Hit
CTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGTGTGGCT226100.1149950258675233No Hit
CTCATTTTTAAAAGAGGATAGAAACTGAACTAGCTCACGCCGTTCTGAACTCAGCTCATGTTAGATTTTAAAGGG221340.11257407795452279No Hit
GTCCTACTCAGGCATAGTTCACCATCTTTCGGGTCCCAACGTGTACGCTCTTGCTCCGCCCCACCAACGATGTGG203540.10352095340590753No Hit
GTCCGGTATAGGTCCGACGCTCTAGCGCCATCCATTTTCAGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACAC199010.10121698406853522No Hit
GGCAGAAATCACATTGCGTCAACACCGGGTGACGGCCATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCC196950.10016926291290895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)