FastQCFastQC Report
Thu 28 Jul 2022
29C_S113_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename29C_S113_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3811918
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACG72240.1895108971389206No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA62870.16493009555819407No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATATCGGAAGAGCACACG39870.10459301590432953No Hit
AATGCCAGGGACTTTCAGACTCAACCCACTTTTTGTACTGTACATAACAT39860.10456678239143655No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACGT38580.10120889274113451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)