FastQCFastQC Report
Thu 28 Jul 2022
23C_S107_L002_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename23C_S107_L002_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3734707
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACG77700.20804844931610433No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA64130.17171360430684388No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATATCGGAAGAGCACACG40860.10940617296082396No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACGT39130.10477394879973181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)