FastQCFastQC Report
Thu 28 Jul 2022
23C_S107_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename23C_S107_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3764961
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACG82480.21907265440465387No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA65890.17500845294280604No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATATCGGAAGAGCACACG44980.11947002903881343No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACGT41810.1110502871078877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)