A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-06-05, 04:54
based on data in:
/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat
General Statistics
Showing 131/131 rows.| Sample Name | % Aligned |
|---|---|
| A1-T001F_S100_hisat | 72.1% |
| A1-T030F_S196_hisat | 68.0% |
| A10-T015F_S172_hisat | 70.7% |
| A11-T027F_S180_hisat | 69.9% |
| A12-T021G_S188_hisat | 64.1% |
| A2-T009F_S108_hisat | 73.6% |
| A2-T039F_S204_hisat | 67.7% |
| A3-T005G_S116_hisat | 62.1% |
| A3-T035G_S212_hisat | 64.8% |
| A4-T002FX_S220_hisat | 71.8% |
| A4-T126F_S124_hisat | 70.0% |
| A5-T010FX_S228_hisat | 71.8% |
| A5-T134F_S132_hisat | 69.1% |
| A6-T130G_S140_hisat | 62.8% |
| A7-T046F_S148_hisat | 67.3% |
| A8-T110F_S156_hisat | 69.2% |
| A9-T055G_S164_hisat | 63.2% |
| B1-T002F_S101_hisat | 72.0% |
| B1-T031F_S197_hisat | 69.0% |
| B10-T016F_S173_hisat | 68.2% |
| B11-T118F_S181_hisat | 71.1% |
| B12-T023G_S189_hisat | 64.1% |
| B2-T010F_S109_hisat | 72.3% |
| B2-T040F_S205_hisat | 65.6% |
| B3-T006G_S117_hisat | 63.6% |
| B3-T036G_S213_hisat | 63.8% |
| B4-T003FX_S221_hisat | 70.8% |
| B4-T127F_S125_hisat | 70.0% |
| B5-T011FX_S229_hisat | 70.1% |
| B5-T135F_S133_hisat | 67.8% |
| B6-T131G_S141_hisat | 63.2% |
| B7-T049F_S149_hisat | 67.2% |
| B8-T111F_S157_hisat | 69.1% |
| B9-T056G_S165_hisat | 63.2% |
| C1-T003F_S102_hisat | 72.8% |
| C1-T033F_S198_hisat | 68.2% |
| C10-T017F_S174_hisat | 68.0% |
| C11-T119F_S182_hisat | 70.8% |
| C12-T025G_S190_hisat | 60.8% |
| C2-T011F_S110_hisat | 71.7% |
| C2-T041F_S206_hisat | 68.3% |
| C3-T007G_S118_hisat | 66.7% |
| C3-T037G_S214_hisat | 63.4% |
| C4-T004FX_S222_hisat | 70.7% |
| C4-T128F_S126_hisat | 69.4% |
| C5-T012FX_S230_hisat | 70.2% |
| C5-T136F_S134_hisat | 68.8% |
| C6-T132G_S142_hisat | 64.2% |
| C7-T051F_S150_hisat | 79.0% |
| C8-T112F_S158_hisat | 69.7% |
| C9-T057G_S166_hisat | 65.0% |
| D1-T004F_S103_hisat | 72.4% |
| D1-T034F_S199_hisat | 71.0% |
| D10-T019F_S175_hisat | 69.5% |
| D11-T014G_S183_hisat | 64.8% |
| D12-T026G_S191_hisat | 63.6% |
| D2-T012F_S111_hisat | 70.8% |
| D2-T029G_S207_hisat | 62.5% |
| D3-T008G_S119_hisat | 66.1% |
| D3-T038G_S215_hisat | 63.1% |
| D4-T005FX_S223_hisat | 70.8% |
| D4-T129F_S127_hisat | 69.4% |
| D5-T137F_S135_hisat | 68.5% |
| D6-T133G_S143_hisat | 64.4% |
| D7-T052F_S151_hisat | 67.9% |
| D8-T046G_S159_hisat | 63.3% |
| D9-T058G_S167_hisat | 64.4% |
| E1-T005F_S104_hisat | 72.1% |
| E1-T035F_S200_hisat | 68.9% |
| E10-T021F_S176_hisat | 67.3% |
| E11-T015G_S184_hisat | 64.7% |
| E12-T027G_S192_hisat | 63.5% |
| E2-T001G_S112_hisat | 67.0% |
| E2-T030G_S208_hisat | 62.3% |
| E3-T009G_S120_hisat | 66.4% |
| E3-T039G_S216_hisat | 63.3% |
| E4-T006FX_S224_hisat | 70.8% |
| E4-T130F_S128_hisat | 70.6% |
| E5-T126G_S136_hisat | 63.0% |
| E6-T134G_S144_hisat | 63.0% |
| E7-T055F_S152_hisat | 68.3% |
| E8-T047G_S160_hisat | 64.3% |
| E9-T110G_S168_hisat | 63.5% |
| F1-T006F_S105_hisat | 74.2% |
| F1-T036F_S201_hisat | 69.7% |
| F10-T023F_S177_hisat | 70.4% |
| F11-T016G_S185_hisat | 61.8% |
| F12-T118G_S193_hisat | 65.2% |
| F2-T002G_S113_hisat | 67.2% |
| F2-T031G_S209_hisat | 63.5% |
| F3-T010G_S121_hisat | 66.1% |
| F3-T040G_S217_hisat | 63.4% |
| F4-T007FX_S225_hisat | 73.8% |
| F4-T131F_S129_hisat | 69.6% |
| F5-T127G_S137_hisat | 64.2% |
| F6-T135G_S145_hisat | 63.4% |
| F7-T056F_S153_hisat | 68.2% |
| F8-T049G_S161_hisat | 63.1% |
| F9-T111G_S169_hisat | 63.7% |
| G1-T007F_S106_hisat | 72.1% |
| G1-T037F_S202_hisat | 71.8% |
| G10-T025F_S178_hisat | 66.8% |
| G11-T017G_S186_hisat | 64.2% |
| G12-T119G_S194_hisat | 64.5% |
| G2-T003G_S114_hisat | 65.7% |
| G2-T033G_S210_hisat | 61.4% |
| G3-T011G_S122_hisat | 65.9% |
| G3-T041G_S218_hisat | 63.6% |
| G4-T008FX_S226_hisat | 70.1% |
| G4-T132F_S130_hisat | 70.8% |
| G5-T128G_S138_hisat | 64.0% |
| G6-T136G_S146_hisat | 63.8% |
| G7-T057F_S154_hisat | 70.6% |
| G8-T051G_S162_hisat | 63.8% |
| G9-T112G_S170_hisat | 63.2% |
| H1-T008F_S107_hisat | 70.5% |
| H1-T038F_S203_hisat | 68.7% |
| H10-T026F_S179_hisat | 70.1% |
| H11-T019G_S187_hisat | 64.9% |
| H12-T029F_S195_hisat | 72.5% |
| H2-T004G_S115_hisat | 65.7% |
| H2-T034G_S211_hisat | 62.7% |
| H3-T001FX_S219_hisat | 71.8% |
| H3-T012G_S123_hisat | 64.7% |
| H4-T009FX_S227_hisat | 72.4% |
| H4-T133F_S131_hisat | 69.4% |
| H5-T129G_S139_hisat | 62.3% |
| H6-T137G_S147_hisat | 62.1% |
| H7-T058F_S155_hisat | 67.9% |
| H8-T052G_S163_hisat | 64.1% |
| H9-T014F_S171_hisat | 71.0% |
Bowtie 2 / HiSAT2
Bowtie 2 and HISAT2 are fast and memory-efficient tools for aligning sequencing reads against a reference genome. Unfortunately both tools have identical log output by default, so it is impossible to distiguish which tool was used. .DOI: 10.1038/nmeth.1923; 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4.
Single-end alignments
This plot shows the number of reads aligning to the reference in different ways.
There are 3 possible types of alignment:
- SE mapped uniquely: Read has only one occurence in the reference genome.
- SE multimapped: Read has multiple occurence.
- SE not aligned: Read has no occurence.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
