{
    "report_data_sources": {
        "Bowtie 2 / HiSAT2": {
            "all_sections": {
                "B4-T003FX_S221_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B4-T003FX_S221_hisat.stderr",
                "F5-T127G_S137_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F5-T127G_S137_hisat.stderr",
                "D1-T034F_S199_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D1-T034F_S199_hisat.stderr",
                "E6-T134G_S144_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E6-T134G_S144_hisat.stderr",
                "F3-T040G_S217_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F3-T040G_S217_hisat.stderr",
                "B4-T127F_S125_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B4-T127F_S125_hisat.stderr",
                "F3-T010G_S121_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F3-T010G_S121_hisat.stderr",
                "G7-T057F_S154_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G7-T057F_S154_hisat.stderr",
                "G2-T003G_S114_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G2-T003G_S114_hisat.stderr",
                "F9-T111G_S169_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F9-T111G_S169_hisat.stderr",
                "H1-T038F_S203_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H1-T038F_S203_hisat.stderr",
                "D9-T058G_S167_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D9-T058G_S167_hisat.stderr",
                "A9-T055G_S164_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A9-T055G_S164_hisat.stderr",
                "D1-T004F_S103_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D1-T004F_S103_hisat.stderr",
                "H9-T014F_S171_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H9-T014F_S171_hisat.stderr",
                "H2-T004G_S115_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H2-T004G_S115_hisat.stderr",
                "H12-T029F_S195_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H12-T029F_S195_hisat.stderr",
                "H7-T058F_S155_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H7-T058F_S155_hisat.stderr",
                "B12-T023G_S189_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B12-T023G_S189_hisat.stderr",
                "G3-T041G_S218_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G3-T041G_S218_hisat.stderr",
                "C12-T025G_S190_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C12-T025G_S190_hisat.stderr",
                "A1-T030F_S196_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A1-T030F_S196_hisat.stderr",
                "C1-T033F_S198_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C1-T033F_S198_hisat.stderr",
                "D4-T005FX_S223_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D4-T005FX_S223_hisat.stderr",
                "A1-T001F_S100_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A1-T001F_S100_hisat.stderr",
                "D7-T052F_S151_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D7-T052F_S151_hisat.stderr",
                "C1-T003F_S102_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C1-T003F_S102_hisat.stderr",
                "A12-T021G_S188_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A12-T021G_S188_hisat.stderr",
                "A10-T015F_S172_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A10-T015F_S172_hisat.stderr",
                "C10-T017F_S174_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C10-T017F_S174_hisat.stderr",
                "B9-T056G_S165_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B9-T056G_S165_hisat.stderr",
                "E2-T030G_S208_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E2-T030G_S208_hisat.stderr",
                "D2-T012F_S111_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D2-T012F_S111_hisat.stderr",
                "B3-T036G_S213_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B3-T036G_S213_hisat.stderr",
                "E4-T006FX_S224_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E4-T006FX_S224_hisat.stderr",
                "E2-T001G_S112_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E2-T001G_S112_hisat.stderr",
                "F4-T007FX_S225_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F4-T007FX_S225_hisat.stderr",
                "A4-T002FX_S220_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A4-T002FX_S220_hisat.stderr",
                "H2-T034G_S211_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H2-T034G_S211_hisat.stderr",
                "C2-T041F_S206_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C2-T041F_S206_hisat.stderr",
                "G9-T112G_S170_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G9-T112G_S170_hisat.stderr",
                "H1-T008F_S107_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H1-T008F_S107_hisat.stderr",
                "D10-T019F_S175_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D10-T019F_S175_hisat.stderr",
                "H11-T019G_S187_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H11-T019G_S187_hisat.stderr",
                "E10-T021F_S176_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E10-T021F_S176_hisat.stderr",
                "H10-T026F_S179_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H10-T026F_S179_hisat.stderr",
                "H5-T129G_S139_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H5-T129G_S139_hisat.stderr",
                "D4-T129F_S127_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D4-T129F_S127_hisat.stderr",
                "G1-T007F_S106_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G1-T007F_S106_hisat.stderr",
                "E11-T015G_S184_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E11-T015G_S184_hisat.stderr",
                "A7-T046F_S148_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A7-T046F_S148_hisat.stderr",
                "H4-T009FX_S227_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H4-T009FX_S227_hisat.stderr",
                "E5-T126G_S136_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E5-T126G_S136_hisat.stderr",
                "D2-T029G_S207_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D2-T029G_S207_hisat.stderr",
                "C4-T004FX_S222_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C4-T004FX_S222_hisat.stderr",
                "F2-T002G_S113_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F2-T002G_S113_hisat.stderr",
                "A11-T027F_S180_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A11-T027F_S180_hisat.stderr",
                "C3-T037G_S214_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C3-T037G_S214_hisat.stderr",
                "B2-T010F_S109_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B2-T010F_S109_hisat.stderr",
                "H3-T001FX_S219_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H3-T001FX_S219_hisat.stderr",
                "H6-T137G_S147_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H6-T137G_S147_hisat.stderr",
                "F8-T049G_S161_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F8-T049G_S161_hisat.stderr",
                "G10-T025F_S178_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G10-T025F_S178_hisat.stderr",
                "A5-T134F_S132_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A5-T134F_S132_hisat.stderr",
                "B6-T131G_S141_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B6-T131G_S141_hisat.stderr",
                "G4-T008FX_S226_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G4-T008FX_S226_hisat.stderr",
                "B5-T135F_S133_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B5-T135F_S133_hisat.stderr",
                "F10-T023F_S177_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F10-T023F_S177_hisat.stderr",
                "H4-T133F_S131_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H4-T133F_S131_hisat.stderr",
                "A3-T035G_S212_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A3-T035G_S212_hisat.stderr",
                "E3-T039G_S216_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E3-T039G_S216_hisat.stderr",
                "G8-T051G_S162_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G8-T051G_S162_hisat.stderr",
                "A6-T130G_S140_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A6-T130G_S140_hisat.stderr",
                "F6-T135G_S145_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F6-T135G_S145_hisat.stderr",
                "B2-T040F_S205_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B2-T040F_S205_hisat.stderr",
                "F7-T056F_S153_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F7-T056F_S153_hisat.stderr",
                "C9-T057G_S166_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C9-T057G_S166_hisat.stderr",
                "E3-T009G_S120_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E3-T009G_S120_hisat.stderr",
                "C5-T012FX_S230_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C5-T012FX_S230_hisat.stderr",
                "A4-T126F_S124_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A4-T126F_S124_hisat.stderr",
                "B7-T049F_S149_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B7-T049F_S149_hisat.stderr",
                "E1-T035F_S200_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E1-T035F_S200_hisat.stderr",
                "A8-T110F_S156_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A8-T110F_S156_hisat.stderr",
                "A2-T009F_S108_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A2-T009F_S108_hisat.stderr",
                "C5-T136F_S134_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C5-T136F_S134_hisat.stderr",
                "E12-T027G_S192_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E12-T027G_S192_hisat.stderr",
                "B11-T118F_S181_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B11-T118F_S181_hisat.stderr",
                "F11-T016G_S185_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F11-T016G_S185_hisat.stderr",
                "E9-T110G_S168_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E9-T110G_S168_hisat.stderr",
                "A5-T010FX_S228_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A5-T010FX_S228_hisat.stderr",
                "C3-T007G_S118_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C3-T007G_S118_hisat.stderr",
                "G11-T017G_S186_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G11-T017G_S186_hisat.stderr",
                "E4-T130F_S128_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E4-T130F_S128_hisat.stderr",
                "D3-T008G_S119_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D3-T008G_S119_hisat.stderr",
                "B5-T011FX_S229_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B5-T011FX_S229_hisat.stderr",
                "C2-T011F_S110_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C2-T011F_S110_hisat.stderr",
                "C8-T112F_S158_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C8-T112F_S158_hisat.stderr",
                "G3-T011G_S122_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G3-T011G_S122_hisat.stderr",
                "F12-T118G_S193_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F12-T118G_S193_hisat.stderr",
                "C6-T132G_S142_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C6-T132G_S142_hisat.stderr",
                "D5-T137F_S135_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D5-T137F_S135_hisat.stderr",
                "F2-T031G_S209_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F2-T031G_S209_hisat.stderr",
                "H3-T012G_S123_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H3-T012G_S123_hisat.stderr",
                "A3-T005G_S116_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A3-T005G_S116_hisat.stderr",
                "D6-T133G_S143_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D6-T133G_S143_hisat.stderr",
                "F1-T036F_S201_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F1-T036F_S201_hisat.stderr",
                "H8-T052G_S163_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/H8-T052G_S163_hisat.stderr",
                "G1-T037F_S202_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G1-T037F_S202_hisat.stderr",
                "G4-T132F_S130_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G4-T132F_S130_hisat.stderr",
                "F1-T006F_S105_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F1-T006F_S105_hisat.stderr",
                "B10-T016F_S173_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B10-T016F_S173_hisat.stderr",
                "G6-T136G_S146_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G6-T136G_S146_hisat.stderr",
                "A2-T039F_S204_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/A2-T039F_S204_hisat.stderr",
                "B8-T111F_S157_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B8-T111F_S157_hisat.stderr",
                "G2-T033G_S210_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G2-T033G_S210_hisat.stderr",
                "D12-T026G_S191_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D12-T026G_S191_hisat.stderr",
                "B1-T002F_S101_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B1-T002F_S101_hisat.stderr",
                "G12-T119G_S194_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G12-T119G_S194_hisat.stderr",
                "C11-T119F_S182_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/C11-T119F_S182_hisat.stderr",
                "F4-T131F_S129_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/F4-T131F_S129_hisat.stderr",
                "D8-T046G_S159_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D8-T046G_S159_hisat.stderr",
                "D3-T038G_S215_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/D3-T038G_S215_hisat.stderr",
                "G5-T128G_S138_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/G5-T128G_S138_hisat.stderr",
                "B1-T031F_S197_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/B1-T031F_S197_hisat.stderr",
                "E8-T047G_S160_hisat": "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat/E8-T047G_S160_hisat.stderr",
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                "unpaired_aligned_multi": 353655,
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                "unpaired_aligned_multi": 513154,
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                "unpaired_aligned_multi": 529796,
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                "unpaired_aligned_none": 1055608,
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                "unpaired_aligned_none": 839630,
                "unpaired_aligned_one": 1394513,
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                "overall_alignment_rate": 69.05
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                "unpaired_aligned_one": 1471494,
                "unpaired_aligned_multi": 650481,
                "overall_alignment_rate": 64.29
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                "unpaired_total": 942703,
                "unpaired_aligned_none": 197950,
                "unpaired_aligned_one": 235807,
                "unpaired_aligned_multi": 508946,
                "overall_alignment_rate": 79.0
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                "unpaired_aligned_none": 1045433,
                "unpaired_aligned_one": 1349886,
                "unpaired_aligned_multi": 574864,
                "overall_alignment_rate": 64.8
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            "E7-T055F_S152_hisat": {
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                "unpaired_total": 2996485,
                "unpaired_aligned_none": 948663,
                "unpaired_aligned_one": 1531536,
                "unpaired_aligned_multi": 516286,
                "overall_alignment_rate": 68.34
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            "C4-T128F_S126_hisat": {
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                "unpaired_total": 2754576,
                "unpaired_aligned_none": 842636,
                "unpaired_aligned_one": 1465964,
                "unpaired_aligned_multi": 445976,
                "overall_alignment_rate": 69.41
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                "unpaired_total": 1867874,
                "unpaired_aligned_none": 521771,
                "unpaired_aligned_one": 976902,
                "unpaired_aligned_multi": 369201,
                "overall_alignment_rate": 72.07
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                "unpaired_total": 3261817,
                "unpaired_aligned_none": 1187698,
                "unpaired_aligned_one": 1478740,
                "unpaired_aligned_multi": 595379,
                "overall_alignment_rate": 63.59
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        "multiqc_general_stats": {
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                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.79
            },
            "F5-T127G_S137_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.23
            },
            "D1-T034F_S199_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.05
            },
            "E6-T134G_S144_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 62.98
            },
            "F3-T040G_S217_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.4
            },
            "B4-T127F_S125_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.05
            },
            "F3-T010G_S121_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 66.11
            },
            "G7-T057F_S154_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.58
            },
            "G2-T003G_S114_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 65.68
            },
            "F9-T111G_S169_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.72
            },
            "H1-T038F_S203_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.72
            },
            "D9-T058G_S167_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.44
            },
            "A9-T055G_S164_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.18
            },
            "D1-T004F_S103_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.37
            },
            "H9-T014F_S171_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.97
            },
            "H2-T004G_S115_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 65.74
            },
            "H12-T029F_S195_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.47
            },
            "H7-T058F_S155_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.87
            },
            "B12-T023G_S189_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.06
            },
            "G3-T041G_S218_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.65
            },
            "C12-T025G_S190_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 60.79
            },
            "A1-T030F_S196_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.02
            },
            "C1-T033F_S198_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.18
            },
            "D4-T005FX_S223_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.77
            },
            "A1-T001F_S100_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.12
            },
            "D7-T052F_S151_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.87
            },
            "C1-T003F_S102_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.8
            },
            "A12-T021G_S188_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.14
            },
            "A10-T015F_S172_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.72
            },
            "C10-T017F_S174_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.99
            },
            "B9-T056G_S165_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.25
            },
            "E2-T030G_S208_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 62.27
            },
            "D2-T012F_S111_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.79
            },
            "B3-T036G_S213_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.76
            },
            "E4-T006FX_S224_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.77
            },
            "E2-T001G_S112_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 66.98
            },
            "F4-T007FX_S225_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 73.8
            },
            "A4-T002FX_S220_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.75
            },
            "H2-T034G_S211_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 62.72
            },
            "C2-T041F_S206_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.3
            },
            "G9-T112G_S170_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.24
            },
            "H1-T008F_S107_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.48
            },
            "D10-T019F_S175_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.55
            },
            "H11-T019G_S187_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.87
            },
            "E10-T021F_S176_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.34
            },
            "H10-T026F_S179_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.06
            },
            "H5-T129G_S139_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 62.33
            },
            "D4-T129F_S127_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.36
            },
            "G1-T007F_S106_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.14
            },
            "E11-T015G_S184_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.66
            },
            "A7-T046F_S148_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.28
            },
            "H4-T009FX_S227_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.44
            },
            "E5-T126G_S136_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.05
            },
            "D2-T029G_S207_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 62.46
            },
            "C4-T004FX_S222_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.7
            },
            "F2-T002G_S113_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.19
            },
            "A11-T027F_S180_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.92
            },
            "C3-T037G_S214_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.36
            },
            "B2-T010F_S109_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.34
            },
            "H3-T001FX_S219_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.8
            },
            "H6-T137G_S147_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 62.14
            },
            "F8-T049G_S161_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.07
            },
            "G10-T025F_S178_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 66.78
            },
            "A5-T134F_S132_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.1
            },
            "B6-T131G_S141_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.17
            },
            "G4-T008FX_S226_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.14
            },
            "B5-T135F_S133_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.75
            },
            "F10-T023F_S177_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.36
            },
            "H4-T133F_S131_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.43
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                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.35
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                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 65.61
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                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.21
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                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.95
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            "E3-T009G_S120_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 66.43
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                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.17
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            "A4-T126F_S124_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.95
            },
            "B7-T049F_S149_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.18
            },
            "E1-T035F_S200_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.94
            },
            "A8-T110F_S156_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.17
            },
            "A2-T009F_S108_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 73.57
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            "C5-T136F_S134_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.76
            },
            "E12-T027G_S192_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.53
            },
            "B11-T118F_S181_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.08
            },
            "F11-T016G_S185_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 61.82
            },
            "E9-T110G_S168_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.5
            },
            "A5-T010FX_S228_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.75
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                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 66.66
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            "G11-T017G_S186_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.23
            },
            "E4-T130F_S128_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.63
            },
            "D3-T008G_S119_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 66.09
            },
            "B5-T011FX_S229_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.12
            },
            "C2-T011F_S110_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.74
            },
            "C8-T112F_S158_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.74
            },
            "G3-T011G_S122_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 65.94
            },
            "F12-T118G_S193_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 65.15
            },
            "C6-T132G_S142_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.18
            },
            "D5-T137F_S135_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.53
            },
            "F2-T031G_S209_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.48
            },
            "H3-T012G_S123_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.68
            },
            "A3-T005G_S116_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 62.07
            },
            "D6-T133G_S143_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.41
            },
            "F1-T036F_S201_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.68
            },
            "H8-T052G_S163_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.06
            },
            "G1-T037F_S202_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.8
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            "G4-T132F_S130_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.78
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            "F1-T006F_S105_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 74.22
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            "B10-T016F_S173_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.24
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            "G6-T136G_S146_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.77
            },
            "A2-T039F_S204_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 67.65
            },
            "B8-T111F_S157_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.08
            },
            "G2-T033G_S210_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 61.41
            },
            "D12-T026G_S191_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.58
            },
            "B1-T002F_S101_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 71.96
            },
            "G12-T119G_S194_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.49
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            "C11-T119F_S182_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 70.75
            },
            "F4-T131F_S129_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.61
            },
            "D8-T046G_S159_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.34
            },
            "D3-T038G_S215_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.11
            },
            "G5-T128G_S138_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.03
            },
            "B1-T031F_S197_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.05
            },
            "E8-T047G_S160_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.29
            },
            "C7-T051F_S150_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 79.0
            },
            "D11-T014G_S183_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 64.8
            },
            "E7-T055F_S152_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 68.34
            },
            "C4-T128F_S126_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 69.41
            },
            "E1-T005F_S104_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 72.07
            },
            "B3-T006G_S117_hisat": {
                "Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate": 63.59
            }
        }
    },
    "config_analysis_dir_abs": [
        "/home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat"
    ],
    "config_analysis_dir": [
        "../output/13-Hisat/"
    ],
    "config_creation_date": "2024-06-04, 09:22",
    "config_git_hash": null,
    "config_intro_text": null,
    "config_report_comment": null,
    "config_report_header_info": null,
    "config_script_path": "/opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc/utils",
    "config_short_version": "1.12",
    "config_subtitle": null,
    "config_title": null,
    "config_version": "1.12"
}
