[2024-06-04 09:22:36,274] multiqc [DEBUG ] This is MultiQC v1.12 [2024-06-04 09:22:36,274] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2024-06-04 09:22:36,274] multiqc [DEBUG ] No MultiQC config found: /home/sr320/.multiqc_config.yaml [2024-06-04 09:22:36,274] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-06-04 09:22:36,274] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc ../output/13-Hisat/ -o ../output/13-Hisat/ [2024-06-04 09:22:37,313] multiqc [WARNING] MultiQC Version v1.22.2 now available! [2024-06-04 09:22:37,313] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc ../output/13-Hisat/ -o ../output/13-Hisat/ [2024-06-04 09:22:37,313] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/code [2024-06-04 09:22:37,313] multiqc [DEBUG ] Template : default [2024-06-04 09:22:37,313] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2024-06-04 09:22:37,315] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-06-04 09:22:37,315] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpr9l43bb2 [2024-06-04 09:22:37,779] multiqc [INFO ] Search path : /home/shared/8TB_HDD_03/sr320/github/grace-L-byssus/output/13-Hisat [2024-06-04 09:22:37,800] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D11-T014G_S183.gtf [2024-06-04 09:22:37,800] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T005F_S104.bam [2024-06-04 09:22:37,800] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B6-T131G_S141.sorted.bam.bai [2024-06-04 09:22:37,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A10-T015F_S172.bam [2024-06-04 09:22:37,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T033G_S210.gtf [2024-06-04 09:22:37,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T038F_S203.bam [2024-06-04 09:22:37,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T127F_S125.bam [2024-06-04 09:22:37,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B12-T023G_S189.bam [2024-06-04 09:22:37,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T006F_S105.gtf [2024-06-04 09:22:37,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T007FX_S225.bam [2024-06-04 09:22:37,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T136F_S134.bam [2024-06-04 09:22:37,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T031G_S209.sorted.bam.bai [2024-06-04 09:22:37,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H6-T137G_S147.sorted.bam.bai [2024-06-04 09:22:37,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10-T021F_S176.sorted.bam.bai [2024-06-04 09:22:37,885] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T030F_S196.sorted.bam [2024-06-04 09:22:37,885] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T041G_S218.sorted.bam [2024-06-04 09:22:37,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T039F_S204.sorted.bam.bai [2024-06-04 09:22:37,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T041F_S206.gtf [2024-06-04 09:22:37,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B10-T016F_S173.gtf [2024-06-04 09:22:37,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F11-T016G_S185.gtf [2024-06-04 09:22:37,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T010G_S121.gtf [2024-06-04 09:22:37,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T033F_S198.bam [2024-06-04 09:22:37,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T128F_S126.bam [2024-06-04 09:22:37,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T011F_S110.bam [2024-06-04 09:22:37,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T003F_S102.bam [2024-06-04 09:22:37,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D10-T019F_S175.sorted.bam.bai [2024-06-04 09:22:37,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T001FX_S219.gtf [2024-06-04 09:22:37,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T006F_S105.sorted.bam [2024-06-04 09:22:37,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9-T110G_S168.sorted.bam.bai [2024-06-04 09:22:37,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T006F_S105.sorted.bam.bai [2024-06-04 09:22:37,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G9-T112G_S170.gtf [2024-06-04 09:22:37,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B8-T111F_S157.sorted.bam [2024-06-04 09:22:37,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T009FX_S227.sorted.bam.bai [2024-06-04 09:22:37,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T006FX_S224.sorted.bam.bai [2024-06-04 09:22:37,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T001G_S112.sorted.bam [2024-06-04 09:22:37,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8-T047G_S160.sorted.bam.bai [2024-06-04 09:22:37,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T129F_S127.sorted.bam [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T009F_S108.bam [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D9-T058G_S167.sorted.bam.bai [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C8-T112F_S158.bam [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T034F_S199.sorted.bam.bai [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T008G_S119.sorted.bam [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T001F_S100.bam [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G5-T128G_S138.sorted.bam [2024-06-04 09:22:37,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T012F_S111.bam [2024-06-04 09:22:37,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T133F_S131.gtf [2024-06-04 09:22:37,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T004FX_S222.bam [2024-06-04 09:22:37,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G8-T051G_S162.sorted.bam [2024-06-04 09:22:37,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F12-T118G_S193.sorted.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F6-T135G_S145.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C12-T025G_S190.gtf [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D10-T019F_S175.sorted.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T033G_S210.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T128F_S126.sorted.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B8-T111F_S157.gtf [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C12-T025G_S190.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12-T027G_S192.sorted.bam.bai [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T008G_S119.gtf [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G12-T119G_S194.sorted.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G7-T057F_S154.sorted.bam.bai [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T004FX_S222.sorted.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D8-T046G_S159.bam [2024-06-04 09:22:37,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T003F_S102.sorted.bam [2024-06-04 09:22:37,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T039F_S204.sorted.bam [2024-06-04 09:22:37,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D11-T014G_S183.sorted.bam.bai [2024-06-04 09:22:37,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F9-T111G_S169.gtf [2024-06-04 09:22:37,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T006G_S117.sorted.bam [2024-06-04 09:22:37,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T127F_S125.sorted.bam [2024-06-04 09:22:37,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F9-T111G_S169.sorted.bam.bai [2024-06-04 09:22:37,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T010F_S109.sorted.bam [2024-06-04 09:22:37,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T129F_S127.bam [2024-06-04 09:22:37,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F6-T135G_S145.sorted.bam.bai [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T037G_S214.sorted.bam.bai [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C12-T025G_S190.sorted.bam [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T134F_S132.bam [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T008F_S107.gtf [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C7-T051F_S150.gtf [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H11-T019G_S187.sorted.bam.bai [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C6-T132G_S142.sorted.bam.bai [2024-06-04 09:22:37,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C10-T017F_S174.gtf [2024-06-04 09:22:37,985] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T005FX_S223.sorted.bam [2024-06-04 09:22:37,997] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T134F_S132.gtf [2024-06-04 09:22:37,997] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T007FX_S225.sorted.bam.bai [2024-06-04 09:22:37,997] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T133F_S131.sorted.bam [2024-06-04 09:22:38,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T040F_S205.bam [2024-06-04 09:22:38,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F9-T111G_S169.bam [2024-06-04 09:22:38,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T001G_S112.gtf [2024-06-04 09:22:38,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T004F_S103.bam [2024-06-04 09:22:38,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T035F_S200.bam [2024-06-04 09:22:38,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T003G_S114.sorted.bam [2024-06-04 09:22:38,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T035G_S212.sorted.bam [2024-06-04 09:22:38,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H8-T052G_S163.sorted.bam.bai [2024-06-04 09:22:38,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7-T055F_S152.sorted.bam [2024-06-04 09:22:38,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T012F_S111.sorted.bam [2024-06-04 09:22:38,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T003FX_S221.gtf [2024-06-04 09:22:38,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F8-T049G_S161.sorted.bam [2024-06-04 09:22:38,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F5-T127G_S137.bam [2024-06-04 09:22:38,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T002G_S113.sorted.bam [2024-06-04 09:22:38,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T041G_S218.sorted.bam.bai [2024-06-04 09:22:38,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T030G_S208.sorted.bam [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B11-T118F_S181.bam [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T029G_S207.sorted.bam.bai [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G12-T119G_S194.bam [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B7-T049F_S149.sorted.bam.bai [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C10-T017F_S174.bam [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T135F_S133.sorted.bam.bai [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A9-T055G_S164.sorted.bam.bai [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T003G_S114.gtf [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10-T021F_S176.sorted.bam [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T001F_S100.sorted.bam [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H9-T014F_S171.sorted.bam.bai [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T005FX_S223.gtf [2024-06-04 09:22:38,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T034G_S211.sorted.bam [2024-06-04 09:22:38,024] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T130F_S128.sorted.bam [2024-06-04 09:22:38,026] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,027] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:38,028] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:39,265] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: t_data.ctab [2024-06-04 09:22:39,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T005F_S104.sorted.bam.bai [2024-06-04 09:22:39,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B9-T056G_S165.gtf [2024-06-04 09:22:39,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T127F_S125.gtf [2024-06-04 09:22:39,359] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T038F_S203.sorted.bam.bai [2024-06-04 09:22:39,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T136F_S134.sorted.bam.bai [2024-06-04 09:22:39,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T002FX_S220.sorted.bam.bai [2024-06-04 09:22:39,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D6-T133G_S143.sorted.bam [2024-06-04 09:22:39,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T008FX_S226.sorted.bam.bai [2024-06-04 09:22:39,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T036G_S213.sorted.bam [2024-06-04 09:22:39,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T006G_S117.sorted.bam.bai [2024-06-04 09:22:39,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B6-T131G_S141.bam [2024-06-04 09:22:39,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H12-T029F_S195.sorted.bam.bai [2024-06-04 09:22:39,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G10-T025F_S178.sorted.bam.bai [2024-06-04 09:22:39,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8-T047G_S160.sorted.bam [2024-06-04 09:22:39,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F9-T111G_S169.sorted.bam [2024-06-04 09:22:39,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F12-T118G_S193.gtf [2024-06-04 09:22:39,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G6-T136G_S146.gtf [2024-06-04 09:22:39,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T007G_S118.sorted.bam [2024-06-04 09:22:39,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,444] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,444] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,445] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,445] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,445] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,445] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,445] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,445] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:39,445] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:42,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: m_spice_sites.tab [2024-06-04 09:22:43,129] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H7-T058F_S155.sorted.bam.bai [2024-06-04 09:22:43,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A6-T130G_S140.sorted.bam.bai [2024-06-04 09:22:43,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T011G_S122.sorted.bam.bai [2024-06-04 09:22:43,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A10-T015F_S172.gtf [2024-06-04 09:22:43,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C6-T132G_S142.bam [2024-06-04 09:22:43,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A6-T130G_S140.bam [2024-06-04 09:22:43,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10-T021F_S176.bam [2024-06-04 09:22:43,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T012G_S123.bam [2024-06-04 09:22:43,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T033G_S210.sorted.bam.bai [2024-06-04 09:22:43,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T037F_S202.sorted.bam.bai [2024-06-04 09:22:43,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8-T047G_S160.gtf [2024-06-04 09:22:43,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G5-T128G_S138.bam [2024-06-04 09:22:43,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T035F_S200.gtf [2024-06-04 09:22:43,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H5-T129G_S139.sorted.bam [2024-06-04 09:22:43,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T130F_S128.gtf [2024-06-04 09:22:43,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H7-T058F_S155.sorted.bam [2024-06-04 09:22:43,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F10-T023F_S177.bam [2024-06-04 09:22:43,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9-T110G_S168.gtf [2024-06-04 09:22:43,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7-T055F_S152.bam [2024-06-04 09:22:43,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A9-T055G_S164.bam [2024-06-04 09:22:43,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D5-T137F_S135.bam [2024-06-04 09:22:43,189] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T132F_S130.bam [2024-06-04 09:22:43,189] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C9-T057G_S166.sorted.bam [2024-06-04 09:22:43,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B10-T016F_S173.bam [2024-06-04 09:22:43,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H11-T019G_S187.gtf [2024-06-04 09:22:43,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T034F_S199.gtf [2024-06-04 09:22:43,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T011G_S122.sorted.bam [2024-06-04 09:22:43,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C8-T112F_S158.sorted.bam.bai [2024-06-04 09:22:43,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T029G_S207.sorted.bam [2024-06-04 09:22:43,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H10-T026F_S179.bam [2024-06-04 09:22:43,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G11-T017G_S186.gtf [2024-06-04 09:22:43,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D8-T046G_S159.gtf [2024-06-04 09:22:43,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11-T015G_S184.bam [2024-06-04 09:22:43,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F7-T056F_S153.sorted.bam [2024-06-04 09:22:43,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F11-T016G_S185.sorted.bam [2024-06-04 09:22:43,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A6-T130G_S140.gtf [2024-06-04 09:22:43,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A11-T027F_S180.sorted.bam.bai [2024-06-04 09:22:43,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H10-T026F_S179.gtf [2024-06-04 09:22:43,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T035F_S200.sorted.bam.bai [2024-06-04 09:22:43,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C9-T057G_S166.sorted.bam.bai [2024-06-04 09:22:43,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D6-T133G_S143.bam [2024-06-04 09:22:43,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B6-T131G_S141.sorted.bam [2024-06-04 09:22:43,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9-T110G_S168.sorted.bam [2024-06-04 09:22:43,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T041F_S206.bam [2024-06-04 09:22:43,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D5-T137F_S135.sorted.bam.bai [2024-06-04 09:22:43,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T126F_S124.bam [2024-06-04 09:22:43,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T037F_S202.bam [2024-06-04 09:22:43,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B10-T016F_S173.sorted.bam [2024-06-04 09:22:43,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T007F_S106.sorted.bam.bai [2024-06-04 09:22:43,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B12-T023G_S189.sorted.bam.bai [2024-06-04 09:22:43,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11-T015G_S184.gtf [2024-06-04 09:22:43,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H12-T029F_S195.gtf [2024-06-04 09:22:43,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7-T055F_S152.gtf [2024-06-04 09:22:43,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G11-T017G_S186.bam [2024-06-04 09:22:43,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C8-T112F_S158.sorted.bam [2024-06-04 09:22:43,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T039G_S216.sorted.bam [2024-06-04 09:22:43,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A11-T027F_S180.bam [2024-06-04 09:22:43,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T011F_S110.sorted.bam.bai [2024-06-04 09:22:43,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T040G_S217.gtf [2024-06-04 09:22:43,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A7-T046F_S148.sorted.bam [2024-06-04 09:22:43,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T012G_S123.sorted.bam.bai [2024-06-04 09:22:43,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T031F_S197.sorted.bam.bai [2024-06-04 09:22:43,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C6-T132G_S142.gtf [2024-06-04 09:22:43,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T006FX_S224.gtf [2024-06-04 09:22:43,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T002FX_S220.gtf [2024-06-04 09:22:43,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T002FX_S220.bam [2024-06-04 09:22:43,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F5-T127G_S137.sorted.bam [2024-06-04 09:22:43,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T008FX_S226.bam [2024-06-04 09:22:43,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T039F_S204.bam [2024-06-04 09:22:43,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A8-T110F_S156.sorted.bam.bai [2024-06-04 09:22:43,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T005F_S104.sorted.bam [2024-06-04 09:22:43,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T008FX_S226.sorted.bam [2024-06-04 09:22:43,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T034F_S199.bam [2024-06-04 09:22:43,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F11-T016G_S185.sorted.bam.bai [2024-06-04 09:22:43,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T038F_S203.sorted.bam [2024-06-04 09:22:43,301] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6-T134G_S144.bam [2024-06-04 09:22:43,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T006G_S117.bam [2024-06-04 09:22:43,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11-T015G_S184.sorted.bam.bai [2024-06-04 09:22:43,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T127F_S125.sorted.bam.bai [2024-06-04 09:22:43,321] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D12-T026G_S191.sorted.bam.bai [2024-06-04 09:22:43,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B12-T023G_S189.gtf [2024-06-04 09:22:43,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-06-04 09:22:43,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-06-04 09:22:43,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-06-04 09:22:43,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-06-04 09:22:43,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-06-04 09:22:43,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T003G_S114.bam [2024-06-04 09:22:43,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H6-T137G_S147.gtf [2024-06-04 09:22:43,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D7-T052F_S151.sorted.bam [2024-06-04 09:22:43,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D12-T026G_S191.sorted.bam [2024-06-04 09:22:43,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T001FX_S219.bam [2024-06-04 09:22:43,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T009FX_S227.bam [2024-06-04 09:22:43,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T001G_S112.bam [2024-06-04 09:22:43,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A7-T046F_S148.gtf [2024-06-04 09:22:43,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B11-T118F_S181.gtf [2024-06-04 09:22:43,394] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T038G_S215.bam [2024-06-04 09:22:43,394] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C11-T119F_S182.sorted.bam [2024-06-04 09:22:43,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F8-T049G_S161.sorted.bam.bai [2024-06-04 09:22:43,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,429] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,429] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,429] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,429] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,429] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,430] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,430] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,430] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.8.ht2 [2024-06-04 09:22:43,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T007G_S118.sorted.bam.bai [2024-06-04 09:22:43,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H9-T014F_S171.bam [2024-06-04 09:22:43,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T010F_S109.gtf [2024-06-04 09:22:43,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T004F_S103.sorted.bam [2024-06-04 09:22:43,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T131F_S129.sorted.bam [2024-06-04 09:22:43,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D8-T046G_S159.sorted.bam.bai [2024-06-04 09:22:43,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T031G_S209.sorted.bam [2024-06-04 09:22:43,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T007F_S106.bam [2024-06-04 09:22:43,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G11-T017G_S186.sorted.bam [2024-06-04 09:22:43,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6-T134G_S144.sorted.bam.bai [2024-06-04 09:22:43,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T038G_S215.gtf [2024-06-04 09:22:43,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A8-T110F_S156.sorted.bam [2024-06-04 09:22:43,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F10-T023F_S177.gtf [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A12-T021G_S188.bam [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T041G_S218.gtf [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F6-T135G_S145.sorted.bam [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T033G_S210.sorted.bam [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T136F_S134.sorted.bam [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T134F_S132.sorted.bam.bai [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F8-T049G_S161.bam [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T036G_S213.bam [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T030F_S196.sorted.bam.bai [2024-06-04 09:22:43,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G7-T057F_S154.sorted.bam [2024-06-04 09:22:43,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T033F_S198.gtf [2024-06-04 09:22:43,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T033F_S198.sorted.bam [2024-06-04 09:22:43,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F5-T127G_S137.gtf [2024-06-04 09:22:43,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F10-T023F_S177.sorted.bam.bai [2024-06-04 09:22:43,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T040F_S205.gtf [2024-06-04 09:22:43,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5-T126G_S136.sorted.bam.bai [2024-06-04 09:22:43,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T134F_S132.sorted.bam [2024-06-04 09:22:43,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T126F_S124.gtf [2024-06-04 09:22:43,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T037F_S202.gtf [2024-06-04 09:22:43,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A7-T046F_S148.bam [2024-06-04 09:22:43,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G10-T025F_S178.sorted.bam [2024-06-04 09:22:43,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T011F_S110.sorted.bam [2024-06-04 09:22:43,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T132F_S130.sorted.bam.bai [2024-06-04 09:22:43,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,512] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:43,513] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:47,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: m_exon.tab [2024-06-04 09:22:47,728] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T012FX_S230.sorted.bam.bai [2024-06-04 09:22:47,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T011G_S122.bam [2024-06-04 09:22:47,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C6-T132G_S142.sorted.bam [2024-06-04 09:22:47,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T002F_S101.sorted.bam [2024-06-04 09:22:47,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D9-T058G_S167.gtf [2024-06-04 09:22:47,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T029G_S207.gtf [2024-06-04 09:22:47,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T005G_S116.sorted.bam.bai [2024-06-04 09:22:47,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F12-T118G_S193.bam [2024-06-04 09:22:47,746] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H5-T129G_S139.bam [2024-06-04 09:22:47,746] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T008F_S107.bam [2024-06-04 09:22:47,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T009G_S120.gtf [2024-06-04 09:22:47,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T041G_S218.bam [2024-06-04 09:22:47,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T003FX_S221.sorted.bam.bai [2024-06-04 09:22:47,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T031F_S197.gtf [2024-06-04 09:22:47,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T031G_S209.gtf [2024-06-04 09:22:47,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T002G_S113.bam [2024-06-04 09:22:47,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T009F_S108.sorted.bam.bai [2024-06-04 09:22:47,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F8-T049G_S161.gtf [2024-06-04 09:22:47,768] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T012G_S123.sorted.bam [2024-06-04 09:22:47,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T009G_S120.sorted.bam [2024-06-04 09:22:47,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G9-T112G_S170.bam [2024-06-04 09:22:47,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C8-T112F_S158.gtf [2024-06-04 09:22:47,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T036F_S201.gtf [2024-06-04 09:22:47,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T037G_S214.bam [2024-06-04 09:22:47,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T010FX_S228.sorted.bam.bai [2024-06-04 09:22:47,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H5-T129G_S139.sorted.bam.bai [2024-06-04 09:22:47,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C7-T051F_S150.sorted.bam.bai [2024-06-04 09:22:47,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A8-T110F_S156.bam [2024-06-04 09:22:47,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T039F_S204.gtf [2024-06-04 09:22:47,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T131F_S129.gtf [2024-06-04 09:22:47,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T012FX_S230.bam [2024-06-04 09:22:47,801] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T036F_S201.sorted.bam [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G12-T119G_S194.gtf [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T002F_S101.sorted.bam.bai [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B11-T118F_S181.sorted.bam [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G3-T011G_S122.gtf [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T007F_S106.sorted.bam [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A12-T021G_S188.sorted.bam.bai [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T010F_S109.sorted.bam.bai [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B7-T049F_S149.sorted.bam [2024-06-04 09:22:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T005G_S116.bam [2024-06-04 09:22:47,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T034F_S199.sorted.bam [2024-06-04 09:22:47,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T006FX_S224.sorted.bam [2024-06-04 09:22:47,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T012F_S111.gtf [2024-06-04 09:22:47,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D10-T019F_S175.bam [2024-06-04 09:22:47,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C12-T025G_S190.sorted.bam.bai [2024-06-04 09:22:47,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T004F_S103.gtf [2024-06-04 09:22:47,832] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T002G_S113.gtf [2024-06-04 09:22:47,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T008FX_S226.gtf [2024-06-04 09:22:47,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T009G_S120.sorted.bam.bai [2024-06-04 09:22:47,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T040G_S217.sorted.bam.bai [2024-06-04 09:22:47,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12-T027G_S192.bam [2024-06-04 09:22:47,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D9-T058G_S167.sorted.bam [2024-06-04 09:22:47,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T006FX_S224.bam [2024-06-04 09:22:47,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A12-T021G_S188.gtf [2024-06-04 09:22:47,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T007G_S118.bam [2024-06-04 09:22:47,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T011F_S110.gtf [2024-06-04 09:22:47,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D7-T052F_S151.gtf [2024-06-04 09:22:47,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H11-T019G_S187.sorted.bam [2024-06-04 09:22:47,890] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T041F_S206.sorted.bam [2024-06-04 09:22:47,890] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G2-T003G_S114.sorted.bam.bai [2024-06-04 09:22:47,890] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C9-T057G_S166.gtf [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11-T015G_S184.sorted.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T040F_S205.sorted.bam.bai [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T010G_S121.sorted.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T031F_S197.sorted.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T039G_S216.gtf [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F10-T023F_S177.sorted.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G9-T112G_S170.sorted.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B11-T118F_S181.sorted.bam.bai [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T039G_S216.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D7-T052F_S151.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D5-T137F_S135.sorted.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5-T126G_S136.sorted.bam [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A10-T015F_S172.sorted.bam.bai [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T030G_S208.sorted.bam.bai [2024-06-04 09:22:47,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10-T021F_S176.gtf [2024-06-04 09:22:47,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T010FX_S228.sorted.bam [2024-06-04 09:22:47,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B7-T049F_S149.bam [2024-06-04 09:22:47,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C9-T057G_S166.bam [2024-06-04 09:22:47,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5-T126G_S136.bam [2024-06-04 09:22:47,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T007G_S118.gtf [2024-06-04 09:22:47,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T009F_S108.gtf [2024-06-04 09:22:47,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T003F_S102.sorted.bam.bai [2024-06-04 09:22:47,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G12-T119G_S194.sorted.bam.bai [2024-06-04 09:22:47,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D10-T019F_S175.gtf [2024-06-04 09:22:47,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G8-T051G_S162.bam [2024-06-04 09:22:47,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T031F_S197.bam [2024-06-04 09:22:47,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T034G_S211.bam [2024-06-04 09:22:47,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T035G_S212.sorted.bam.bai [2024-06-04 09:22:47,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D7-T052F_S151.sorted.bam.bai [2024-06-04 09:22:47,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T008F_S107.sorted.bam [2024-06-04 09:22:47,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.3.ht2 [2024-06-04 09:22:47,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.3.ht2 [2024-06-04 09:22:47,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.3.ht2 [2024-06-04 09:22:47,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.3.ht2 [2024-06-04 09:22:47,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PNRI_Mtr1.1.1.index.3.ht2 [2024-06-04 09:22:47,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C10-T017F_S174.sorted.bam [2024-06-04 09:22:47,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G6-T136G_S146.bam [2024-06-04 09:22:47,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B9-T056G_S165.sorted.bam.bai [2024-06-04 09:22:47,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T001G_S112.sorted.bam.bai [2024-06-04 09:22:47,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G6-T136G_S146.sorted.bam [2024-06-04 09:22:47,992] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T007FX_S225.sorted.bam [2024-06-04 09:22:47,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T034G_S211.gtf [2024-06-04 09:22:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B8-T111F_S157.bam [2024-06-04 09:22:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C11-T119F_S182.bam [2024-06-04 09:22:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T030G_S208.gtf [2024-06-04 09:22:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G10-T025F_S178.gtf [2024-06-04 09:22:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F11-T016G_S185.bam [2024-06-04 09:22:48,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F5-T127G_S137.sorted.bam.bai [2024-06-04 09:22:48,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6-T134G_S144.sorted.bam [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T132F_S130.sorted.bam [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C2-T041F_S206.sorted.bam.bai [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T005G_S116.sorted.bam [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T037G_S214.gtf [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T010G_S121.sorted.bam.bai [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H8-T052G_S163.sorted.bam [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A12-T021G_S188.sorted.bam [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A11-T027F_S180.sorted.bam [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T006F_S105.bam [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D6-T133G_S143.gtf [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C10-T017F_S174.sorted.bam.bai [2024-06-04 09:22:48,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D5-T137F_S135.gtf [2024-06-04 09:22:48,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T004G_S115.sorted.bam.bai [2024-06-04 09:22:48,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T130F_S128.bam [2024-06-04 09:22:48,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G5-T128G_S138.sorted.bam.bai [2024-06-04 09:22:48,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T003F_S102.gtf [2024-06-04 09:22:48,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T005FX_S223.bam [2024-06-04 09:22:48,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G10-T025F_S178.bam [2024-06-04 09:22:48,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A2-T009F_S108.sorted.bam [2024-06-04 09:22:48,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T038G_S215.sorted.bam [2024-06-04 09:22:48,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T011FX_S229.bam [2024-06-04 09:22:48,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A6-T130G_S140.sorted.bam [2024-06-04 09:22:48,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C7-T051F_S150.sorted.bam [2024-06-04 09:22:48,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T008G_S119.sorted.bam.bai [2024-06-04 09:22:48,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T128F_S126.gtf [2024-06-04 09:22:48,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T010F_S109.bam [2024-06-04 09:22:48,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G7-T057F_S154.gtf [2024-06-04 09:22:48,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H5-T129G_S139.gtf [2024-06-04 09:22:48,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H12-T029F_S195.bam [2024-06-04 09:22:48,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D1-T004F_S103.sorted.bam.bai [2024-06-04 09:22:48,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5-T126G_S136.gtf [2024-06-04 09:22:48,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T006G_S117.gtf [2024-06-04 09:22:48,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T135F_S133.bam [2024-06-04 09:22:48,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T002FX_S220.sorted.bam [2024-06-04 09:22:48,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T034G_S211.sorted.bam.bai [2024-06-04 09:22:48,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T135F_S133.gtf [2024-06-04 09:22:48,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H8-T052G_S163.gtf [2024-06-04 09:22:48,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4-T130F_S128.sorted.bam.bai [2024-06-04 09:22:48,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G8-T051G_S162.sorted.bam.bai [2024-06-04 09:22:48,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T031G_S209.bam [2024-06-04 09:22:48,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H9-T014F_S171.gtf [2024-06-04 09:22:48,118] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T010G_S121.bam [2024-06-04 09:22:48,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T030F_S196.gtf [2024-06-04 09:22:48,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T004G_S115.sorted.bam [2024-06-04 09:22:48,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F7-T056F_S153.sorted.bam.bai [2024-06-04 09:22:48,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H8-T052G_S163.bam [2024-06-04 09:22:48,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T036F_S201.bam [2024-06-04 09:22:48,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T029G_S207.bam [2024-06-04 09:22:48,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T003FX_S221.bam [2024-06-04 09:22:48,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C11-T119F_S182.sorted.bam.bai [2024-06-04 09:22:48,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D11-T014G_S183.sorted.bam [2024-06-04 09:22:48,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T005F_S104.gtf [2024-06-04 09:22:48,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D12-T026G_S191.gtf [2024-06-04 09:22:48,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H9-T014F_S171.sorted.bam [2024-06-04 09:22:48,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C3-T037G_S214.sorted.bam [2024-06-04 09:22:48,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T002F_S101.bam [2024-06-04 09:22:48,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T008G_S119.bam [2024-06-04 09:22:48,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A8-T110F_S156.gtf [2024-06-04 09:22:48,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T004FX_S222.sorted.bam.bai [2024-06-04 09:22:48,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T126F_S124.sorted.bam.bai [2024-06-04 09:22:48,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T039G_S216.sorted.bam.bai [2024-06-04 09:22:48,184] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,185] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,185] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,185] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,185] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,185] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,185] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,186] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,186] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,186] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:48,186] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:55,175] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: e2t.ctab [2024-06-04 09:22:55,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G6-T136G_S146.sorted.bam.bai [2024-06-04 09:22:55,610] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T036G_S213.sorted.bam.bai [2024-06-04 09:22:55,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1-T035F_S200.sorted.bam [2024-06-04 09:22:55,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G5-T128G_S138.gtf [2024-06-04 09:22:55,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H10-T026F_S179.sorted.bam [2024-06-04 09:22:55,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12-T027G_S192.sorted.bam [2024-06-04 09:22:55,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B7-T049F_S149.gtf [2024-06-04 09:22:55,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H7-T058F_S155.gtf [2024-06-04 09:22:55,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F6-T135G_S145.gtf [2024-06-04 09:22:55,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B9-T056G_S165.bam [2024-06-04 09:22:55,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F1-T036F_S201.sorted.bam.bai [2024-06-04 09:22:55,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A9-T055G_S164.gtf [2024-06-04 09:22:55,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H6-T137G_S147.sorted.bam [2024-06-04 09:22:55,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G7-T057F_S154.bam [2024-06-04 09:22:55,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T010FX_S228.gtf [2024-06-04 09:22:55,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T008F_S107.sorted.bam.bai [2024-06-04 09:22:55,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9-T110G_S168.bam [2024-06-04 09:22:55,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B9-T056G_S165.sorted.bam [2024-06-04 09:22:55,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A4-T126F_S124.sorted.bam [2024-06-04 09:22:55,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T135F_S133.sorted.bam [2024-06-04 09:22:55,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,639] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,640] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,640] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,641] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,641] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,641] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,641] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,641] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,641] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:22:55,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:23:01,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: i2t.ctab [2024-06-04 09:23:02,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T004G_S115.gtf [2024-06-04 09:23:02,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A5-T010FX_S228.bam [2024-06-04 09:23:02,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T005G_S116.gtf [2024-06-04 09:23:02,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F7-T056F_S153.gtf [2024-06-04 09:23:02,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B10-T016F_S173.sorted.bam.bai [2024-06-04 09:23:02,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A9-T055G_S164.sorted.bam [2024-06-04 09:23:02,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T040G_S217.sorted.bam [2024-06-04 09:23:02,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C1-T033F_S198.sorted.bam.bai [2024-06-04 09:23:02,056] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T129F_S127.gtf [2024-06-04 09:23:02,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G11-T017G_S186.sorted.bam.bai [2024-06-04 09:23:02,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T001FX_S219.sorted.bam [2024-06-04 09:23:02,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2-T030G_S208.bam [2024-06-04 09:23:02,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T136F_S134.gtf [2024-06-04 09:23:02,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T004FX_S222.gtf [2024-06-04 09:23:02,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8-T047G_S160.bam [2024-06-04 09:23:02,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H7-T058F_S155.bam [2024-06-04 09:23:02,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12-T027G_S192.gtf [2024-06-04 09:23:02,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D11-T014G_S183.bam [2024-06-04 09:23:02,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T001FX_S219.sorted.bam.bai [2024-06-04 09:23:02,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B1-T002F_S101.gtf [2024-06-04 09:23:02,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T009FX_S227.sorted.bam [2024-06-04 09:23:02,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T007FX_S225.gtf [2024-06-04 09:23:02,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T037F_S202.sorted.bam [2024-06-04 09:23:02,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T030F_S196.bam [2024-06-04 09:23:02,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H12-T029F_S195.sorted.bam [2024-06-04 09:23:02,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D9-T058G_S167.bam [2024-06-04 09:23:02,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D3-T038G_S215.sorted.bam.bai [2024-06-04 09:23:02,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T012FX_S230.sorted.bam [2024-06-04 09:23:02,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T131F_S129.sorted.bam.bai [2024-06-04 09:23:02,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6-T134G_S144.gtf [2024-06-04 09:23:02,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T129F_S127.sorted.bam.bai [2024-06-04 09:23:02,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G4-T132F_S130.gtf [2024-06-04 09:23:02,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G1-T007F_S106.gtf [2024-06-04 09:23:02,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H10-T026F_S179.sorted.bam.bai [2024-06-04 09:23:02,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F2-T002G_S113.sorted.bam.bai [2024-06-04 09:23:02,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T011FX_S229.gtf [2024-06-04 09:23:02,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C7-T051F_S150.bam [2024-06-04 09:23:02,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A7-T046F_S148.sorted.bam.bai [2024-06-04 09:23:02,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A10-T015F_S172.sorted.bam [2024-06-04 09:23:02,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H11-T019G_S187.bam [2024-06-04 09:23:02,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D8-T046G_S159.sorted.bam [2024-06-04 09:23:02,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T001F_S100.gtf [2024-06-04 09:23:02,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C4-T128F_S126.sorted.bam.bai [2024-06-04 09:23:02,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B8-T111F_S157.sorted.bam.bai [2024-06-04 09:23:02,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T133F_S131.sorted.bam.bai [2024-06-04 09:23:02,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T035G_S212.bam [2024-06-04 09:23:02,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H1-T038F_S203.gtf [2024-06-04 09:23:02,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T009FX_S227.gtf [2024-06-04 09:23:02,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T011FX_S229.sorted.bam.bai [2024-06-04 09:23:02,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B2-T040F_S205.sorted.bam [2024-06-04 09:23:02,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D12-T026G_S191.bam [2024-06-04 09:23:02,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G8-T051G_S162.gtf [2024-06-04 09:23:02,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B12-T023G_S189.sorted.bam [2024-06-04 09:23:02,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A1-T001F_S100.sorted.bam.bai [2024-06-04 09:23:02,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F12-T118G_S193.sorted.bam.bai [2024-06-04 09:23:02,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3-T009G_S120.bam [2024-06-04 09:23:02,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G9-T112G_S170.sorted.bam.bai [2024-06-04 09:23:02,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H4-T133F_S131.bam [2024-06-04 09:23:02,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B5-T011FX_S229.sorted.bam [2024-06-04 09:23:02,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F7-T056F_S153.bam [2024-06-04 09:23:02,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B4-T003FX_S221.sorted.bam [2024-06-04 09:23:02,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F3-T040G_S217.bam [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B6-T131G_S141.gtf [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C11-T119F_S182.gtf [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D6-T133G_S143.sorted.bam.bai [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C5-T012FX_S230.gtf [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A11-T027F_S180.gtf [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7-T055F_S152.sorted.bam.bai [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H3-T012G_S123.gtf [2024-06-04 09:23:02,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: B3-T036G_S213.gtf [2024-06-04 09:23:02,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: A3-T035G_S212.gtf [2024-06-04 09:23:02,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H2-T004G_S115.bam [2024-06-04 09:23:02,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D2-T012F_S111.sorted.bam.bai [2024-06-04 09:23:02,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: D4-T005FX_S223.sorted.bam.bai [2024-06-04 09:23:02,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F4-T131F_S129.bam [2024-06-04 09:23:02,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: H6-T137G_S147.bam [2024-06-04 09:23:03,554] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-06-04 09:23:03,638] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 131 reports [2024-06-04 09:23:08,202] multiqc [INFO ] Compressing plot data [2024-06-04 09:23:08,208] multiqc [INFO ] Report : ../output/13-Hisat/multiqc_report.html [2024-06-04 09:23:08,208] multiqc [INFO ] Data : ../output/13-Hisat/multiqc_data [2024-06-04 09:23:08,208] multiqc [DEBUG ] Moving data file from '/tmp/tmpr9l43bb2/multiqc_data' to '../output/13-Hisat/multiqc_data' [2024-06-04 09:23:08,407] multiqc [INFO ] MultiQC complete [2024-06-04 09:23:08,407] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers