Alignment Stats
| Sequence pairs analysed in total |
90605411 |
| Paired-end alignments with a unique best hit |
55543581 |
| Pairs without alignments under any condition |
20159676 |
| Pairs that did not map uniquely |
14902154 |
| Genomic sequence context not extractable (edges of chromosomes) |
132 |
|
|
Cytosine Methylation
| Total C's analysed |
1919611382 |
| Methylated C's in CpG context |
25390230 |
| Methylated C's in CHG context |
1605629 |
| Methylated C's in CHH context |
6877825 |
| Methylated C's in Unknown context |
64253 |
| Unmethylated C's in CpG context |
221478350 |
| Unmethylated C's in CHG context |
332078494 |
| Unmethylated C's in CHH context |
1332180854 |
| Unmethylated C's in Unknown context |
4697286 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
13773128 |
original top strand |
| CTOT |
13966090 |
complementary to original top strand |
| CTOB |
13998198 |
complementary to original bottom strand |
| OB |
13806033 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
55543449 |
| Unique alignments |
44096319 |
| Duplicates removed |
11447130 |
| Duplicated alignments were found at 9375294 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1036370828 |
| Methylated C's in CpG context |
13257071 |
| Methylated C's in CHG context |
856075 |
| Methylated C's in CHH context |
3718164 |
| Unmethylated C's in CpG context |
118387681 |
| Unmethylated C's in CHG context |
177358593 |
| Unmethylated C's in CHH context |
722793244 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
