Alignment Stats
| Sequence pairs analysed in total |
84046138 |
| Paired-end alignments with a unique best hit |
51605460 |
| Pairs without alignments under any condition |
18775249 |
| Pairs that did not map uniquely |
13665429 |
| Genomic sequence context not extractable (edges of chromosomes) |
131 |
|
|
Cytosine Methylation
| Total C's analysed |
1797447404 |
| Methylated C's in CpG context |
26305415 |
| Methylated C's in CHG context |
1561214 |
| Methylated C's in CHH context |
6629878 |
| Methylated C's in Unknown context |
63671 |
| Unmethylated C's in CpG context |
207531853 |
| Unmethylated C's in CHG context |
312507188 |
| Unmethylated C's in CHH context |
1242911856 |
| Unmethylated C's in Unknown context |
4404409 |
| Percentage methylation (CpG context) |
11.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
12883364 |
original top strand |
| CTOT |
12873781 |
complementary to original top strand |
| CTOB |
12919828 |
complementary to original bottom strand |
| OB |
12928356 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
51605329 |
| Unique alignments |
41935142 |
| Duplicates removed |
9670187 |
| Duplicated alignments were found at 8064818 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1001853984 |
| Methylated C's in CpG context |
14205083 |
| Methylated C's in CHG context |
857017 |
| Methylated C's in CHH context |
3688422 |
| Unmethylated C's in CpG context |
114075011 |
| Unmethylated C's in CHG context |
172180736 |
| Unmethylated C's in CHH context |
696847715 |
| Percentage methylation (CpG context) |
11.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
