Alignment Stats
| Sequence pairs analysed in total |
74728031 |
| Paired-end alignments with a unique best hit |
45908181 |
| Pairs without alignments under any condition |
16768986 |
| Pairs that did not map uniquely |
12050864 |
| Genomic sequence context not extractable (edges of chromosomes) |
102 |
|
|
Cytosine Methylation
| Total C's analysed |
1599391484 |
| Methylated C's in CpG context |
23340714 |
| Methylated C's in CHG context |
1384115 |
| Methylated C's in CHH context |
5878620 |
| Methylated C's in Unknown context |
57442 |
| Unmethylated C's in CpG context |
184831527 |
| Unmethylated C's in CHG context |
278458490 |
| Unmethylated C's in CHH context |
1105498018 |
| Unmethylated C's in Unknown context |
3919106 |
| Percentage methylation (CpG context) |
11.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11420758 |
original top strand |
| CTOT |
11501621 |
complementary to original top strand |
| CTOB |
11533549 |
complementary to original bottom strand |
| OB |
11452151 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
45908079 |
| Unique alignments |
37692238 |
| Duplicates removed |
8215841 |
| Duplicated alignments were found at 6925548 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
905767036 |
| Methylated C's in CpG context |
12781614 |
| Methylated C's in CHG context |
771949 |
| Methylated C's in CHH context |
3313636 |
| Unmethylated C's in CpG context |
103354653 |
| Unmethylated C's in CHG context |
155896761 |
| Unmethylated C's in CHH context |
629648423 |
| Percentage methylation (CpG context) |
11.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
