Alignment Stats
| Sequence pairs analysed in total |
78091157 |
| Paired-end alignments with a unique best hit |
47623705 |
| Pairs without alignments under any condition |
18311792 |
| Pairs that did not map uniquely |
12155660 |
| Genomic sequence context not extractable (edges of chromosomes) |
94 |
|
|
Cytosine Methylation
| Total C's analysed |
1670693519 |
| Methylated C's in CpG context |
25533290 |
| Methylated C's in CHG context |
1462648 |
| Methylated C's in CHH context |
6171814 |
| Methylated C's in Unknown context |
61366 |
| Unmethylated C's in CpG context |
191641924 |
| Unmethylated C's in CHG context |
289598207 |
| Unmethylated C's in CHH context |
1156285636 |
| Unmethylated C's in Unknown context |
4126149 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11910708 |
original top strand |
| CTOT |
11863283 |
complementary to original top strand |
| CTOB |
11897437 |
complementary to original bottom strand |
| OB |
11952183 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
47623611 |
| Unique alignments |
39133069 |
| Duplicates removed |
8490542 |
| Duplicated alignments were found at 7141080 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
966714974 |
| Methylated C's in CpG context |
14292801 |
| Methylated C's in CHG context |
833216 |
| Methylated C's in CHH context |
3552711 |
| Unmethylated C's in CpG context |
109585647 |
| Unmethylated C's in CHG context |
165674993 |
| Unmethylated C's in CHH context |
672775606 |
| Percentage methylation (CpG context) |
11.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
