zr3534_1_R1.fastp-trim.20201202_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 38388821 lines in total Total number of methylation call strings processed: 76777642 Final Cytosine Methylation Report ================================= Total number of C's analysed: 923441134 Total methylated C's in CpG context: 12160729 Total methylated C's in CHG context: 771829 Total methylated C's in CHH context: 3314006 Total C to T conversions in CpG context: 106774410 Total C to T conversions in CHG context: 159361439 Total C to T conversions in CHH context: 641058721 C methylated in CpG context: 10.2% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%